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The map label for this gene is nusB

Identifier: 41407196

GI number: 41407196

Start: 1150338

End: 1150808

Strand: Direct

Name: nusB

Synonym: MAP1098

Alternate gene names: 41407196

Gene position: 1150338-1150808 (Clockwise)

Preceding gene: 41407195

Following gene: 41407197

Centisome position: 23.82

GC content: 74.1

Gene sequence:

>471_bases
GTGAGCAAACCCCTGAGGGGACGCCATCAGGCCCGCAAGCGCGCGGTCGACCTGCTGTTCGAGGCCGAGGCGCGGGGGTT
GAGCCCGGCCGAGGTGGTCGACGTCCGGACCGGCCTGGCCGACACCAACCCCGAAGTGGCGCCCCTGCAGCCGTACACGG
CCGCGGTGGCCCGGGGGGTGGGCGACCACGCCGCCCACATCGACGACCTGATCAGCTCGCACCTGCAGGGCTGGACGCTG
GACCGGCTGCCCGCCGTGGACCGCGCCATCCTGCGGGTGGCGGTGTGGGAGCTGCTGTACGCCGACGACGTGCCCGAGCC
GGTCGCCGTCGACGAGGCCGTCCAGCTGGCCAAGGAGCTGTCCACCGACGACTCGCCGGGCTTCGTCAACGGCGTGCTGG
GCCAGGTCATGCTGGTGACGCCGCAGATCAGGGCGGCCGCCCGGGCGGTGCGGGGTCCCCGGGACACGTGA

Upstream 100 bases:

>100_bases
TGGAAACCGGCGCGGAGATCCAGGTGCCGCTGTTCATCAACACCGGCGACAAGCTCAAGGTGGACACCCGCGACGGCAGC
TACCTGGGGCGCGTCAACGC

Downstream 100 bases:

>100_bases
CCCGGTTGGAGCTGCGCCTGGTCGTCGCGGCCGTGCTGGCGGCGACGGTGGTGGTGGGCGCGGTGGTGTGCGCCGCCTAC
CACCTGAGCATCGTCGCCTC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGVGDHAAHIDDLISSHLQGWTL
DRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTPQIRAAARAVRGPRDT

Sequences:

>Translated_156_residues
MSKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGVGDHAAHIDDLISSHLQGWTL
DRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTPQIRAAARAVRGPRDT
>Mature_155_residues
SKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGVGDHAAHIDDLISSHLQGWTLD
RLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTPQIRAAARAVRGPRDT

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=84, Percent_Identity=40.4761904761905, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_MYCA1 (A0QI54)

Other databases:

- EMBL:   CP000479
- RefSeq:   YP_882592.1
- ProteinModelPortal:   A0QI54
- SMR:   A0QI54
- STRING:   A0QI54
- EnsemblBacteria:   EBMYCT00000012012
- GeneID:   4530052
- GenomeReviews:   CP000479_GR
- KEGG:   mav:MAV_3410
- TIGR:   MAV_3410
- eggNOG:   COG0781
- GeneTree:   EBGT00050000017513
- HOGENOM:   HBG734409
- OMA:   DDSPSFV
- PhylomeDB:   A0QI54
- ProtClustDB:   PRK00202
- BioCyc:   MAVI243243:MAV_3410-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16798; Mature: 16667

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGV
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
GDHAAHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKEL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
STDDSPGFVNGVLGQVMLVTPQIRAAARAVRGPRDT
CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGV
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
GDHAAHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKEL
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
STDDSPGFVNGVLGQVMLVTPQIRAAARAVRGPRDT
CCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA