Click here to switch to the map view.

The map label for this gene is soxC [H]

Identifier: 41407183

GI number: 41407183

Start: 1138345

End: 1139565

Strand: Direct

Name: soxC [H]

Synonym: MAP1085

Alternate gene names: 41407183

Gene position: 1138345-1139565 (Clockwise)

Preceding gene: 41407179

Following gene: 41407184

Centisome position: 23.57

GC content: 72.24

Gene sequence:

>1221_bases
CTGACACGTATGCCCGTTGCATTTCACCGGCAGGACACACCCGCGGGCGCGGCGGCGGTGCAGCCCGTGCTCGCCGAGAT
CGCCGCGGACTACCGCCTGCGGTTGGCCGACGGGGGCACCGAACCGCCGCTGCGTGGGCTCAAACTGGTTCGCGACCATC
GGCTCGGCGCGCTGCGATTGGCCCGCGAGCTGGGCGGCGCCGGCTACACGGCGCCGGAGTTCTTCGACTACCTCGTCGCG
CTGGCCGCCGCCGACCCCGACCTGGCGCATATCCTGCGGATCCACTACGCACTGGTCGAGGAGCTGCAAGTCACGCCGCG
GCGCCCGGGCAGCGACCGGTGGATCGCGGTGGTCGCCGAGGGCGGGCTGATCGGCGGCGCCAACGCCGAACAGAGCCAGA
AGTCGGTGGGCGGCAACCACCGTGACACCCGGCTGGTCACCACTCCCGACGGGTTGCGGTTGCGCGGCAGGAAGTTCTAC
AGCACCGGCGCGCAGTTCTCCGACTACCTGCGGATCACCGCGCAGGACGACGACGGCGCGCCGACCGCCGTGGTGATTCC
GGTCGACCGGGCCGGGGTCGAGCACCTCGACGACTGGGACGGCATCGGTCAGCGCCAGACAGGAAGCGGCACAACGGTAT
TCAACGACGTTGCGGTCGCCGACGACGAAGTGTTCCCGCTCGGTTCGACCATCGGCGTCAACCGGGCCCGCGGCGCGCTG
GTCCAGCTGTACCTGCACGCGGTGGCCGCCGGAATCCTGCGCAGCCTGACCGAGGACGCCGCGGCGCTGGTGCGCGGGCG
GCGCCGGACCTACACGTTCGCCAGCGCCGACACCCCGACCGCCGACCCGCAACTGCTGCAGATCGTCGGCGAGATCGACG
CGGTGGCCTACACCGCGCACGCCCTGGTGCGCAACGCGGCGGCCGAGCTCGCCCCGGCGCTGCAGGCCGCCCGCGACACC
GGGATCGATCCGGAACTGGAAGCCGCGGCATCGATCGCCGCCGCCCGTGTCAAGGTGGCGATCCAGGAGCCCGCGCTGCG
GGCGGCGTCACGCGTGTTCGACGCCGGCGGCGCGTCCGCCGTCCAGGCGTCGGCGCTGCTGGACCGGCACTGGCGTAATC
TGCGGACGCTGTTCTCGCACAACCCGACGGTCTACAAGGCGCGGGTGCTCGGCGATGTCGCCGTCAACGGCGCCGCCCTG
CCCGACACCAGCTTCTTCTGA

Upstream 100 bases:

>100_bases
AAATTGTGACGCGGTAAACCGTTGCCGGCATTGTGCGGCGGCGCCTAGGTTTGGTCGCTGTTGCCGCGGACCGCCGCGGC
GCGGACGCATCCGGAAGGCT

Downstream 100 bases:

>100_bases
CCCGCTTGCATGGCGAAGGTAGCGACGCGCACCGCGACGCTGGGCGCGGTGCTGTGCGTCCTGGCGGCGGGGTGTTCCGG
CCATCGGCACACCGCGAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MTRMPVAFHRQDTPAGAAAVQPVLAEIAADYRLRLADGGTEPPLRGLKLVRDHRLGALRLARELGGAGYTAPEFFDYLVA
LAAADPDLAHILRIHYALVEELQVTPRRPGSDRWIAVVAEGGLIGGANAEQSQKSVGGNHRDTRLVTTPDGLRLRGRKFY
STGAQFSDYLRITAQDDDGAPTAVVIPVDRAGVEHLDDWDGIGQRQTGSGTTVFNDVAVADDEVFPLGSTIGVNRARGAL
VQLYLHAVAAGILRSLTEDAAALVRGRRRTYTFASADTPTADPQLLQIVGEIDAVAYTAHALVRNAAAELAPALQAARDT
GIDPELEAAASIAAARVKVAIQEPALRAASRVFDAGGASAVQASALLDRHWRNLRTLFSHNPTVYKARVLGDVAVNGAAL
PDTSFF

Sequences:

>Translated_406_residues
MTRMPVAFHRQDTPAGAAAVQPVLAEIAADYRLRLADGGTEPPLRGLKLVRDHRLGALRLARELGGAGYTAPEFFDYLVA
LAAADPDLAHILRIHYALVEELQVTPRRPGSDRWIAVVAEGGLIGGANAEQSQKSVGGNHRDTRLVTTPDGLRLRGRKFY
STGAQFSDYLRITAQDDDGAPTAVVIPVDRAGVEHLDDWDGIGQRQTGSGTTVFNDVAVADDEVFPLGSTIGVNRARGAL
VQLYLHAVAAGILRSLTEDAAALVRGRRRTYTFASADTPTADPQLLQIVGEIDAVAYTAHALVRNAAAELAPALQAARDT
GIDPELEAAASIAAARVKVAIQEPALRAASRVFDAGGASAVQASALLDRHWRNLRTLFSHNPTVYKARVLGDVAVNGAAL
PDTSFF
>Mature_405_residues
TRMPVAFHRQDTPAGAAAVQPVLAEIAADYRLRLADGGTEPPLRGLKLVRDHRLGALRLARELGGAGYTAPEFFDYLVAL
AAADPDLAHILRIHYALVEELQVTPRRPGSDRWIAVVAEGGLIGGANAEQSQKSVGGNHRDTRLVTTPDGLRLRGRKFYS
TGAQFSDYLRITAQDDDGAPTAVVIPVDRAGVEHLDDWDGIGQRQTGSGTTVFNDVAVADDEVFPLGSTIGVNRARGALV
QLYLHAVAAGILRSLTEDAAALVRGRRRTYTFASADTPTADPQLLQIVGEIDAVAYTAHALVRNAAAELAPALQAARDTG
IDPELEAAASIAAARVKVAIQEPALRAASRVFDAGGASAVQASALLDRHWRNLRTLFSHNPTVYKARVLGDVAVNGAALP
DTSFF

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 43137; Mature: 43006

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRMPVAFHRQDTPAGAAAVQPVLAEIAADYRLRLADGGTEPPLRGLKLVRDHRLGALRL
CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCHHHHHH
ARELGGAGYTAPEFFDYLVALAAADPDLAHILRIHYALVEELQVTPRRPGSDRWIAVVAE
HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
GGLIGGANAEQSQKSVGGNHRDTRLVTTPDGLRLRGRKFYSTGAQFSDYLRITAQDDDGA
CCEEECCCCHHHHHHCCCCCCCCEEEECCCCCEECCCCHHCCCCCCCEEEEEEEECCCCC
PTAVVIPVDRAGVEHLDDWDGIGQRQTGSGTTVFNDVAVADDEVFPLGSTIGVNRARGAL
CEEEEEECCCCCCHHCCHHCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCCCHHHHHH
VQLYLHAVAAGILRSLTEDAAALVRGRRRTYTFASADTPTADPQLLQIVGEIDAVAYTAH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
ALVRNAAAELAPALQAARDTGIDPELEAAASIAAARVKVAIQEPALRAASRVFDAGGASA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCHH
VQASALLDRHWRNLRTLFSHNPTVYKARVLGDVAVNGAALPDTSFF
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TRMPVAFHRQDTPAGAAAVQPVLAEIAADYRLRLADGGTEPPLRGLKLVRDHRLGALRL
CCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHCCHHHHHH
ARELGGAGYTAPEFFDYLVALAAADPDLAHILRIHYALVEELQVTPRRPGSDRWIAVVAE
HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
GGLIGGANAEQSQKSVGGNHRDTRLVTTPDGLRLRGRKFYSTGAQFSDYLRITAQDDDGA
CCEEECCCCHHHHHHCCCCCCCCEEEECCCCCEECCCCHHCCCCCCCEEEEEEEECCCCC
PTAVVIPVDRAGVEHLDDWDGIGQRQTGSGTTVFNDVAVADDEVFPLGSTIGVNRARGAL
CEEEEEECCCCCCHHCCHHCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCCCHHHHHH
VQLYLHAVAAGILRSLTEDAAALVRGRRRTYTFASADTPTADPQLLQIVGEIDAVAYTAH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
ALVRNAAAELAPALQAARDTGIDPELEAAASIAAARVKVAIQEPALRAASRVFDAGGASA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCHH
VQASALLDRHWRNLRTLFSHNPTVYKARVLGDVAVNGAALPDTSFF
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]