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The map label for this gene is yagA [H]

Identifier: 41406351

GI number: 41406351

Start: 273897

End: 275084

Strand: Direct

Name: yagA [H]

Synonym: MAP0253

Alternate gene names: 41406351

Gene position: 273897-275084 (Clockwise)

Preceding gene: 41406348

Following gene: 41406354

Centisome position: 5.67

GC content: 64.81

Gene sequence:

>1188_bases
ATGAGGGAGTTAAGTGTGGCTGAGCAGCGGTATCAGGCCGTGATGGCGGTAATCAGTGACGGGTTGTCGGTGTCGCAGGC
CGCAGAGAAGTTCGGGGTGGCGCGTCAGACGCTGCACCGATGGCTGGCCCGGTATGAAGCCGCGGGCCTGGAAGGACTGG
TGGATCGGTCGCATCGGCCGGTGAGTTGTCCGCATCAGATGCCGGCGGTAGTGGAGGCTGAGATGTTGGAGTTGCGCCGC
TCGCGGCCCTATTGGGGGCCGCGGCGGTTGGTGTTCGAGTTGGCCAAGCGAGGTGTCCATCCGGTGCCGTCGGAGTCGGC
GGTGTATCGAGCGCTGGTGCGGGCCGGTCTGATCGACCCCGCGATGCGAGATCGACGGTCGCGCAAATGGAAGCGCTGGG
AGCGCGGGGCGCCGATGGAGTTGTGGCAGCTCGACATCGTCGGCGGGTTCCCGCTGGCCGATGGCACCAGCGCCAAAGCC
CTGACCGGCATCGATGATCATTCCCGGATGTGTGTGTGCGCCAAGCTGATGGCCCGTGAGCGCACCCGCGCGGTCTGCGA
CGGATTACGGGCGGCGCTGGCCGCTTACGGGGTGCCTGAGCAGATCTTGACCGATAACGGCAAGGTGTTCACCGAGCGGT
TTTGTCATCCACCGGTCGAGGTGCTCTTTGATGCGATCTGCCGCGAGCACGGCATCGAACATCTGTTGACCCAGCCGCGC
AGCCCGACCACGACCGGCAAAATCGAGCAGTTTCACCGCAGTCTGCGCGCTGAGTTCCTTAGCGGCCGTGAGCCTTTCAC
CAACCTCAAGGTCGCTCAGCAGGCGCTCGATGAGTGGGTCGAGGACTACAACACCACCCGGCCGCACCAAGCCCTAAAGA
TGATCACACCGGCTCAACGGTTTCACGCCGGTGCGCCGGCATCACCACCGTCGAACTCGTGTGCCCGACACGTCGACCGC
AGTGGTGATGACTGGGTGAGTCGGCGGGTGTGCTCCAACGGCATCGTGTGCGTGTCCTGGCAGCAGGTCTGTATCGGGCG
CCACTATGCCGGCGCCCGCTGCGATGTCCACGTCGATGGGGACCTGCTGAGGTTTTGGGTCGGCGACAATCTGGTCAAAA
CCGCCGCGCGCACCAGCCGCGGCGAGGTACGAAACAAACAGGCCCTGCGCACCAACGCACCGGCCTAA

Upstream 100 bases:

>100_bases
TGACGTCGGCTGATGTGTGACGTTTTGTCTTCGGTTGATGTGTGACGGTGTTTCGGTTGATGCGTGACAGTTGTTTCGGC
TGATCGGTGACACTCCCTAG

Downstream 100 bases:

>100_bases
AACACAACCCAGAGTGTCACCGATCAACCGACATAGAAATGTCACCGATCAACCGACTCTGAACAGGCGCGCTTTTTCAG
TCAGCTTTCTTCGCGTCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MRELSVAEQRYQAVMAVISDGLSVSQAAEKFGVARQTLHRWLARYEAAGLEGLVDRSHRPVSCPHQMPAVVEAEMLELRR
SRPYWGPRRLVFELAKRGVHPVPSESAVYRALVRAGLIDPAMRDRRSRKWKRWERGAPMELWQLDIVGGFPLADGTSAKA
LTGIDDHSRMCVCAKLMARERTRAVCDGLRAALAAYGVPEQILTDNGKVFTERFCHPPVEVLFDAICREHGIEHLLTQPR
SPTTTGKIEQFHRSLRAEFLSGREPFTNLKVAQQALDEWVEDYNTTRPHQALKMITPAQRFHAGAPASPPSNSCARHVDR
SGDDWVSRRVCSNGIVCVSWQQVCIGRHYAGARCDVHVDGDLLRFWVGDNLVKTAARTSRGEVRNKQALRTNAPA

Sequences:

>Translated_395_residues
MRELSVAEQRYQAVMAVISDGLSVSQAAEKFGVARQTLHRWLARYEAAGLEGLVDRSHRPVSCPHQMPAVVEAEMLELRR
SRPYWGPRRLVFELAKRGVHPVPSESAVYRALVRAGLIDPAMRDRRSRKWKRWERGAPMELWQLDIVGGFPLADGTSAKA
LTGIDDHSRMCVCAKLMARERTRAVCDGLRAALAAYGVPEQILTDNGKVFTERFCHPPVEVLFDAICREHGIEHLLTQPR
SPTTTGKIEQFHRSLRAEFLSGREPFTNLKVAQQALDEWVEDYNTTRPHQALKMITPAQRFHAGAPASPPSNSCARHVDR
SGDDWVSRRVCSNGIVCVSWQQVCIGRHYAGARCDVHVDGDLLRFWVGDNLVKTAARTSRGEVRNKQALRTNAPA
>Mature_395_residues
MRELSVAEQRYQAVMAVISDGLSVSQAAEKFGVARQTLHRWLARYEAAGLEGLVDRSHRPVSCPHQMPAVVEAEMLELRR
SRPYWGPRRLVFELAKRGVHPVPSESAVYRALVRAGLIDPAMRDRRSRKWKRWERGAPMELWQLDIVGGFPLADGTSAKA
LTGIDDHSRMCVCAKLMARERTRAVCDGLRAALAAYGVPEQILTDNGKVFTERFCHPPVEVLFDAICREHGIEHLLTQPR
SPTTTGKIEQFHRSLRAEFLSGREPFTNLKVAQQALDEWVEDYNTTRPHQALKMITPAQRFHAGAPASPPSNSCARHVDR
SGDDWVSRRVCSNGIVCVSWQQVCIGRHYAGARCDVHVDGDLLRFWVGDNLVKTAARTSRGEVRNKQALRTNAPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=365, Percent_Identity=29.3150684931507, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 44326; Mature: 44326

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS50994 INTEGRASE ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRELSVAEQRYQAVMAVISDGLSVSQAAEKFGVARQTLHRWLARYEAAGLEGLVDRSHRP
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC
VSCPHQMPAVVEAEMLELRRSRPYWGPRRLVFELAKRGVHPVPSESAVYRALVRAGLIDP
CCCCHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCH
AMRDRRSRKWKRWERGAPMELWQLDIVGGFPLADGTSAKALTGIDDHSRMCVCAKLMARE
HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
RTRAVCDGLRAALAAYGVPEQILTDNGKVFTERFCHPPVEVLFDAICREHGIEHLLTQPR
HHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCHHHHHCCCC
SPTTTGKIEQFHRSLRAEFLSGREPFTNLKVAQQALDEWVEDYNTTRPHQALKMITPAQR
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHH
FHAGAPASPPSNSCARHVDRSGDDWVSRRVCSNGIVCVSWQQVCIGRHYAGARCDVHVDG
HCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCEEEEEECC
DLLRFWVGDNLVKTAARTSRGEVRNKQALRTNAPA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRELSVAEQRYQAVMAVISDGLSVSQAAEKFGVARQTLHRWLARYEAAGLEGLVDRSHRP
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC
VSCPHQMPAVVEAEMLELRRSRPYWGPRRLVFELAKRGVHPVPSESAVYRALVRAGLIDP
CCCCHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCH
AMRDRRSRKWKRWERGAPMELWQLDIVGGFPLADGTSAKALTGIDDHSRMCVCAKLMARE
HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
RTRAVCDGLRAALAAYGVPEQILTDNGKVFTERFCHPPVEVLFDAICREHGIEHLLTQPR
HHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHCHHHHHCCCC
SPTTTGKIEQFHRSLRAEFLSGREPFTNLKVAQQALDEWVEDYNTTRPHQALKMITPAQR
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHH
FHAGAPASPPSNSCARHVDRSGDDWVSRRVCSNGIVCVSWQQVCIGRHYAGARCDVHVDG
HCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCEEEEEECC
DLLRFWVGDNLVKTAARTSRGEVRNKQALRTNAPA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]