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The map label for this gene is radC [C]

Identifier: 52842697

GI number: 52842697

Start: 2803224

End: 2803907

Strand: Direct

Name: radC [C]

Synonym: lpg2489

Alternate gene names: 52842697

Gene position: 2803224-2803907 (Clockwise)

Preceding gene: 52842693

Following gene: 52842698

Centisome position: 82.5

GC content: 39.62

Gene sequence:

>684_bases
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAACTACTTACTAATGGAGTACATAGCCTCTCTGATAT
TGAATTGTTAGCCGTTTTCATCAGTTCGGGTAACAATAAAAAATCTTGTTTGCAACTAGCCTATGAGCTCACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAGGTTCGTTATGCA
CAACTTCAGGCTGCGAAAGAAATATGTCATCGAAGTGATTTTATTCATCTGCAAAAAGAAATCCGGTTATCTAACACACA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATTATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACGGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCATCCCTCGGGCTTGTCTGATGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGATTTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Upstream 100 bases:

>100_bases
TTTTTTATTAATAAAATCTTGCATGGATCGCCATTTTTGATAAGAATAACCCCGATCAAAGCACAAACTTCGCAATAAAG
GAATATAAAAGGAATACAAA

Downstream 100 bases:

>100_bases
TTCCCGTCCCTATCATTTGAGTTAATGGATTAAAAATGCTCCAACCTTTTATTACAGATTTTATAAAAAATAGTTCGTTT
CAATTTATTTTTGTAATGGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Sequences:

>Translated_227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN
>Mature_227_residues
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=219, Percent_Identity=42.0091324200913, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=45.0819672131148, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788997, Length=122, Percent_Identity=45.0819672131148, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=44, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 25750; Mature: 25750

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNI
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LNADLQSFKSIHGLGEVRYAQLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
KNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVERVLQLNAAALILAHNHPSGLS
CCCEEEEEEECCCCCEEEHHHHHCCCCCCEEECCHHHHHHHHHHCHHEEEEEECCCCCCC
DASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCC
>Mature Secondary Structure
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAVFISSGNNKKSCLQLAYELTKHLGNLRNI
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LNADLQSFKSIHGLGEVRYAQLQAAKEICHRSDFIHLQKEIRLSNTQQTYAFLKKRLRDY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
KNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVERVLQLNAAALILAHNHPSGLS
CCCEEEEEEECCCCCEEEHHHHHCCCCCCEEECCHHHHHHHHHHCHHEEEEEECCCCCCC
DASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA