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The map label for this gene is yrrB [H]

Identifier: 52842693

GI number: 52842693

Start: 2798044

End: 2799759

Strand: Direct

Name: yrrB [H]

Synonym: lpg2485

Alternate gene names: 52842693

Gene position: 2798044-2799759 (Clockwise)

Preceding gene: 52842692

Following gene: 52842697

Centisome position: 82.35

GC content: 38.23

Gene sequence:

>1716_bases
ATGAACAGTGAAGTAGATACTCTTTTTGCACAAGCCTATAAGCTTCAATATGAAGGCCATTTACCTCAAGCCATTAGCTT
ATATGAGCAGATACTTGCCCAATCACCCAAACATACAGAAACTCTGCATTTCCTGGGATTAACCTATGCCCAATTAGGTG
ATATGGAAAATGCCATTTTATATTTTTTGCAAGCCAGAAAAATTAATCCCAATGACGTTGGTATACTCAATAATCTCGCT
AACGCTTATAAAAAGGCAGGTCAATTAGATGAGGCAATTAAATACTACCAGCAAGCCATTGAGATTAAACCAGAGTATGT
CCAGGCTCATAATAATCTGGCAGCAACCTACGCATTACTCAACAATTACCAGAAAGCGTTGCATCATTATGTGATTGCAG
TGAATACAGAACCTGACTTTAGCGCGGCTCACTTTAATTTAGGTTTATTACTTCTCAAAAATCAACAATTGTCTGCTGCC
AAAACACAATTTAATAATGTGATAGCTCTAAATCCTCAGCACAGAGAAGCTCAATTTTACTTAGGTATTTTGCATTTGGA
AGACAATTTACTCTCAGAGGCAGAACAGGCATTTCATAAAGTGTTAGAGCAAGATCATGAACATGTCCAATCCCTAATTA
ACTTAGGCGTGATCGCTTTGAAAAGAGAACAAAACCAATTAGCTGTTGATTATTTTACCAAAGCCTTGGCTTTGGATAAT
GAAGACATTGATGCACGTAATAATTTGGCAGCCACATTCATGCATCATGATCGATTTGAAAATGCGCTCATGCATTACGA
TGTTTTACTGAAAAAAGAACCCGACAATCTGGAGTATTTATACAATTCCGGAGTCGCTCAAATGGCATTGGGCCATCTCA
ATGAAGCCACCCTTTTGTTTGATCAGATTTTAACATTACAAAGTGATCACACCCCATCCTTGAATAATCTGGCCGCTATT
TATTTAAAAATGGACATGCGAGAAACCGCGCGCGAATATCTTGAGCGCGCTCTGGCAATCAACCCCGATGATGTGATCAG
CAGGCATATGCTGAATGCCATTACAGGGGCAACGAGCGTTAATACTACAGAAAAATATGCCCAAAATTTATTTAATAATT
ATGCCTTGTATTACGACCAACACATGCAAGGTGAATTACACTATAAGATTCCGCATCACATTGGCCGCCTCATCCACCAA
CTTCAACTTTTGCAAACCAGTCATTCTTTGGACTTGGGTTGTGGTACTGGATTAACAGGTATTGTGCTTCGTGAAATAAG
CAAACACTTAACCGGAGTAGATATAGCAGAAAAAATGATAGCTCGAGCAAAGGAAAAAAATATCTATGATCTTCTGGTAT
GCTCGGAATTAATCGATTTTTTAAGAAAAGATAAAAACGATTACGATTTAGCGGTCGCTGCAGACGTCCTACCCTATTTT
GGTAATCTGGATGATATTTTTAATTCCATCAATCAACATCTGAAGCAAGAAGGGTATTTTATTTTCACTACCGAAATCAG
CACAACAACTCCGTGGAAACTGGAAAGCAGCGCTCGATTTAGCCATCAACCCGAATACATAGAGAGCTTAATCAATAAAT
ACCAATTTCATCTTATCAAACAAGAGAAAATACCAGGCCGAACACAAAACAAACAAGTGCTGGAAGTCATGTTGTATTGC
ATACAGAAATCAACCTCTTGTTTTGTTTCCAACTGA

Upstream 100 bases:

>100_bases
TATCAATGCACAGCCGCTGAATTACCTGCTAAAATTAAAAATAGGATTAGCCATCGCGCAAAAGCTTTAAACCAATTACG
CGCCCTTCTTCCAGATTAAT

Downstream 100 bases:

>100_bases
ACTTACGCCCCCCTAATCACTTTGTTAAAAAAAACCGTTCACAGGATATGTAATTAGGGAATACCAAGTGTTCTGTCTTT
CCCGCGAAGGCGAATCTATC

Product: TPR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 571

Protein sequence:

>571_residues
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAILYFLQARKINPNDVGILNNLA
NAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALLNNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAA
KTQFNNVIALNPQHREAQFYLGILHLEDNLLSEAEQAFHKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLFDQILTLQSDHTPSLNNLAAI
YLKMDMRETAREYLERALAINPDDVISRHMLNAITGATSVNTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQ
LQLLQTSHSLDLGCGTGLTGIVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIKQEKIPGRTQNKQVLEVMLYC
IQKSTSCFVSN

Sequences:

>Translated_571_residues
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAILYFLQARKINPNDVGILNNLA
NAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALLNNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAA
KTQFNNVIALNPQHREAQFYLGILHLEDNLLSEAEQAFHKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLFDQILTLQSDHTPSLNNLAAI
YLKMDMRETAREYLERALAINPDDVISRHMLNAITGATSVNTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQ
LQLLQTSHSLDLGCGTGLTGIVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIKQEKIPGRTQNKQVLEVMLYC
IQKSTSCFVSN
>Mature_571_residues
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAILYFLQARKINPNDVGILNNLA
NAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALLNNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAA
KTQFNNVIALNPQHREAQFYLGILHLEDNLLSEAEQAFHKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLFDQILTLQSDHTPSLNNLAAI
YLKMDMRETAREYLERALAINPDDVISRHMLNAITGATSVNTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQ
LQLLQTSHSLDLGCGTGLTGIVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIKQEKIPGRTQNKQVLEVMLYC
IQKSTSCFVSN

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: COG4976

COG function: function code R; Predicted methyltransferase (contains TPR repeat)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307148, Length=379, Percent_Identity=25.3298153034301, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI32307150, Length=379, Percent_Identity=25.3298153034301, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI224809432, Length=319, Percent_Identity=25.3918495297806, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI301336134, Length=336, Percent_Identity=24.4047619047619, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI83415184, Length=336, Percent_Identity=24.4047619047619, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI118766330, Length=251, Percent_Identity=25.8964143426295, Blast_Score=77, Evalue=6e-14,
Organism=Homo sapiens, GI118766328, Length=251, Percent_Identity=25.8964143426295, Blast_Score=76, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI115532692, Length=363, Percent_Identity=25.068870523416, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI115532690, Length=363, Percent_Identity=25.068870523416, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25147174, Length=270, Percent_Identity=23.7037037037037, Blast_Score=72, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6319387, Length=151, Percent_Identity=30.4635761589404, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI17647755, Length=314, Percent_Identity=27.0700636942675, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24585827, Length=314, Percent_Identity=27.0700636942675, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24585829, Length=314, Percent_Identity=27.0700636942675, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24656717, Length=293, Percent_Identity=28.3276450511945, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI18110006, Length=293, Percent_Identity=28.3276450511945, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24647123, Length=267, Percent_Identity=22.8464419475655, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 65253; Mature: 65253

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAIL
CCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
YFLQARKINPNDVGILNNLANAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALL
HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHH
NNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAAKTQFNNVIALNPQHREAQFY
HHHHHHHHEEEEEEECCCCCCCHHCCEEEEEEECCCHHHHHHHHCCEEEECCCCCCCEEE
LGILHLEDNLLSEAEQAFHKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCC
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCHHHHHHHCCCHHHHHH
DQILTLQSDHTPSLNNLAAIYLKMDMRETAREYLERALAINPDDVISRHMLNAITGATSV
HHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
NTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQLQLLQTSHSLDLGCGTGLTG
CCHHHHHHHHHHCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
IVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIK
CCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHEE
QEKIPGRTQNKQVLEVMLYCIQKSTSCFVSN
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNSEVDTLFAQAYKLQYEGHLPQAISLYEQILAQSPKHTETLHFLGLTYAQLGDMENAIL
CCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
YFLQARKINPNDVGILNNLANAYKKAGQLDEAIKYYQQAIEIKPEYVQAHNNLAATYALL
HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHH
NNYQKALHHYVIAVNTEPDFSAAHFNLGLLLLKNQQLSAAKTQFNNVIALNPQHREAQFY
HHHHHHHHEEEEEEECCCCCCCHHCCEEEEEEECCCHHHHHHHHCCEEEECCCCCCCEEE
LGILHLEDNLLSEAEQAFHKVLEQDHEHVQSLINLGVIALKREQNQLAVDYFTKALALDN
EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCC
EDIDARNNLAATFMHHDRFENALMHYDVLLKKEPDNLEYLYNSGVAQMALGHLNEATLLF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCHHHHHHHCCCHHHHHH
DQILTLQSDHTPSLNNLAAIYLKMDMRETAREYLERALAINPDDVISRHMLNAITGATSV
HHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
NTTEKYAQNLFNNYALYYDQHMQGELHYKIPHHIGRLIHQLQLLQTSHSLDLGCGTGLTG
CCHHHHHHHHHHCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
IVLREISKHLTGVDIAEKMIARAKEKNIYDLLVCSELIDFLRKDKNDYDLAVAADVLPYF
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
GNLDDIFNSINQHLKQEGYFIFTTEISTTTPWKLESSARFSHQPEYIESLINKYQFHLIK
CCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHEE
QEKIPGRTQNKQVLEVMLYCIQKSTSCFVSN
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]