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The map label for this gene is 52842535

Identifier: 52842535

GI number: 52842535

Start: 2629339

End: 2630175

Strand: Reverse

Name: 52842535

Synonym: lpg2325

Alternate gene names: NA

Gene position: 2630175-2629339 (Counterclockwise)

Preceding gene: 52842536

Following gene: 52842534

Centisome position: 77.41

GC content: 41.94

Gene sequence:

>837_bases
GTGAGTTATCAAAAACCAATCACACCGGAATATAAAATGAATGAAGATACTATCCGTGATTTTAATCGTAATGGTGCCGT
ATGTCTTCGCCAATTTTTAAATGCGGAAGAAATTGCTATTCTAAAAGAAGGAATAGAATTTAATTTATCCTCCTTAAGTC
CCCGTGCCAAAATAGCCAGCAGACCCGATGATCCTGGTTATTTTGTTGAGGATTTTTGTACTTGGCAAAACAATCCTTTT
TATCAACGAATTATCTTTGGTACGAATTTGGGAGTAGCTGCCGCTCAAATAATGCAAAGCCAATCAGTCCGGTTGTATCA
TGATCATTTGTTGGTAAAGGAACCAGGTACACGACAGGTTACACCCTGGCATCAGGATCAGCCGTATTATAATATTGAGG
GGAAGCAGAACTGCAGTTTCTGGATTCCGGTTGATCCTGTCAGTCGTTCTTCAACTCTGGAATTTATCGCTGGTTCTCAT
TTGGGTCCCTGGTTAATGCCAAGAACATTTTTAGATAATCAGGCAAAATGGTTTCCTGAAGGAAGTTTGCAGGAGTTGCC
TCCTATAGAAGAGGCGCGAGCAAGGTATCCAATTATTGGATGGGAAATTGAGCCAGGCGATGTTGTATGTTTCCATATGC
TGACTTTACACATGGCAAGAGGAGTTGAGGGAAGGCATAGAAGAAGAGTGTTTTCTGTGCGTTTTTTAGGTGATGATATT
ACGCATGCCCCCAGAGCATGGCCTACTTCACCTGATTTTCCTGGTTTGACGGCCGAAATACCGGCAGGCGCTAGCATGGA
TCATCCATTATTTCCATGTTTGCCACTCAAAATATAG

Upstream 100 bases:

>100_bases
TCAAGCGTGCTATAGTCCCTTTTGCCAATGCTCCCAAACAGCAAATCGATTCCATGACGGTAGAGCCAGTTAAACATTTG
CGAGATGTATTGGAGAAAAT

Downstream 100 bases:

>100_bases
TAAAACGATATATTTTATTTCCCTTCAAAAAAGAGCTCATTTTTTCAAGGATAAGATTTTTAAGATTCCTATTCACAACG
GATGTTATTCCAAGAAGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Phytanoyl-CoA Dioxygenase Family Protein; Dioxygenase; Deoxygenase; Phytanoyl-CoA Dioxygenase Protein; Phytanoyl-CoA Dioxygenase Superfamily; SnoK-Like Protein

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSYQKPITPEYKMNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIASRPDDPGYFVEDFCTWQNNPF
YQRIIFGTNLGVAAAQIMQSQSVRLYHDHLLVKEPGTRQVTPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFIAGSH
LGPWLMPRTFLDNQAKWFPEGSLQELPPIEEARARYPIIGWEIEPGDVVCFHMLTLHMARGVEGRHRRRVFSVRFLGDDI
THAPRAWPTSPDFPGLTAEIPAGASMDHPLFPCLPLKI

Sequences:

>Translated_278_residues
MSYQKPITPEYKMNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIASRPDDPGYFVEDFCTWQNNPF
YQRIIFGTNLGVAAAQIMQSQSVRLYHDHLLVKEPGTRQVTPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFIAGSH
LGPWLMPRTFLDNQAKWFPEGSLQELPPIEEARARYPIIGWEIEPGDVVCFHMLTLHMARGVEGRHRRRVFSVRFLGDDI
THAPRAWPTSPDFPGLTAEIPAGASMDHPLFPCLPLKI
>Mature_277_residues
SYQKPITPEYKMNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIASRPDDPGYFVEDFCTWQNNPFY
QRIIFGTNLGVAAAQIMQSQSVRLYHDHLLVKEPGTRQVTPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFIAGSHL
GPWLMPRTFLDNQAKWFPEGSLQELPPIEEARARYPIIGWEIEPGDVVCFHMLTLHMARGVEGRHRRRVFSVRFLGDDIT
HAPRAWPTSPDFPGLTAEIPAGASMDHPLFPCLPLKI

Specific function: Unknown

COG id: COG5285

COG function: function code Q; Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31809; Mature: 31677

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYQKPITPEYKMNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIAS
CCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCHHHHHHHHHCCEECCCCCCCCHHHCC
RPDDPGYFVEDFCTWQNNPFYQRIIFGTNLGVAAAQIMQSQSVRLYHDHLLVKEPGTRQV
CCCCCCCCHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCC
TPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFIAGSHLGPWLMPRTFLDNQAKWFPE
CCCCCCCCEEECCCCCCCEEEEECCCCCCCCEEHHHHCCCCCCHHCCHHHHCCCCCCCCC
GSLQELPPIEEARARYPIIGWEIEPGDVVCFHMLTLHMARGVEGRHRRRVFSVRFLGDDI
CCHHHCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCC
THAPRAWPTSPDFPGLTAEIPAGASMDHPLFPCLPLKI
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SYQKPITPEYKMNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIAS
CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCHHHHHHHHHCCEECCCCCCCCHHHCC
RPDDPGYFVEDFCTWQNNPFYQRIIFGTNLGVAAAQIMQSQSVRLYHDHLLVKEPGTRQV
CCCCCCCCHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEEEEEEECCCCCCC
TPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFIAGSHLGPWLMPRTFLDNQAKWFPE
CCCCCCCCEEECCCCCCCEEEEECCCCCCCCEEHHHHCCCCCCHHCCHHHHCCCCCCCCC
GSLQELPPIEEARARYPIIGWEIEPGDVVCFHMLTLHMARGVEGRHRRRVFSVRFLGDDI
CCHHHCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCC
THAPRAWPTSPDFPGLTAEIPAGASMDHPLFPCLPLKI
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA