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The map label for this gene is ygiV [H]

Identifier: 52842377

GI number: 52842377

Start: 2429231

End: 2430076

Strand: Reverse

Name: ygiV [H]

Synonym: lpg2163

Alternate gene names: 52842377

Gene position: 2430076-2429231 (Counterclockwise)

Preceding gene: 52842378

Following gene: 52842374

Centisome position: 71.52

GC content: 38.18

Gene sequence:

>846_bases
GTGAAATATCAACAGAAATTGAGAAATATGATTGATTTCATTGGAAAGCATCTCGATGAAGAGCTTTCTCTTGAAAGCTT
AAGTGAAATTTTTTGTATATCAAAATTTCACTTTCATCGCTTATTTACTGCATTTACCGGATTGTCTTTGCAGCAGTATA
TTAAATGGCTACGCTTAAAACGCGCTGCTCATCAGCTTATTGTCGATAAAGATCAGTCCGTCATTAACATTGCAATCAAT
GCAGGTTTTGAGTCTCATGAAGCCTTTTCCAGGGCCTTTAAGAAAGCTTGTGGGTTTAGTCCAAGTCAGTTTAGGCAAGG
TTTTGGGAGGTCATATTGGGAGCAGCCACCGTATTGTTTGCCCGGACAGAGTAGAACTGATATGAAAGTAGATATTAAAA
GTATTGATAAGATACGATTAGCTGTAATTGAGCACAAAGGCGATCCTAAATTGCTGGGTGAAAGCATTAACAAGCTGGTA
TCCTGGGCAAAATCTCAATCGATTAATCTTAAACCACGCGCCGGAGAAGCGTTTGCCCTTGCTTATGATGACCCTAAAAC
AACACCACCATCTGATTTTCGTATTGATCTTGGGATCAAGGTCCCCGAAAATTTAAAATTGGATGGTGTGATTGAAAAGT
TTCTGCCATCAGGTCGTTATGCAGTGACGGTACACAAAGGTTCGCGTAATAATATTGGTGATGTGGTTTATTATCTTTAT
CGAGATTGGTTACCCAATACCTCAGAACAATTAGGAGATTTACCCTGTATCTTCTGTTATTACAATTTTGATCATGAAGT
AGCTGAAACGGAACTTTTAACGGAATGTTGGCTTTTGTTAAAATAA

Upstream 100 bases:

>100_bases
CACATTTTTCTCAATTAAATCAGCAAAAATGGTCAAATATTTTCAGTAAGAAAACAGTATTCTTATTCTGTAAATCAAGT
TAATAATCGGAAACAAGAAA

Downstream 100 bases:

>100_bases
TCCGCTTTAAACAGCAGTCAGAATAGCTGATAACAATAGATCGGGCATAACCGGCATCTTTCATTTTATTGCTGTGTTAC
AAACGTTTCTGAGGCAATTT

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKYQQKLRNMIDFIGKHLDEELSLESLSEIFCISKFHFHRLFTAFTGLSLQQYIKWLRLKRAAHQLIVDKDQSVINIAIN
AGFESHEAFSRAFKKACGFSPSQFRQGFGRSYWEQPPYCLPGQSRTDMKVDIKSIDKIRLAVIEHKGDPKLLGESINKLV
SWAKSQSINLKPRAGEAFALAYDDPKTTPPSDFRIDLGIKVPENLKLDGVIEKFLPSGRYAVTVHKGSRNNIGDVVYYLY
RDWLPNTSEQLGDLPCIFCYYNFDHEVAETELLTECWLLLK

Sequences:

>Translated_281_residues
MKYQQKLRNMIDFIGKHLDEELSLESLSEIFCISKFHFHRLFTAFTGLSLQQYIKWLRLKRAAHQLIVDKDQSVINIAIN
AGFESHEAFSRAFKKACGFSPSQFRQGFGRSYWEQPPYCLPGQSRTDMKVDIKSIDKIRLAVIEHKGDPKLLGESINKLV
SWAKSQSINLKPRAGEAFALAYDDPKTTPPSDFRIDLGIKVPENLKLDGVIEKFLPSGRYAVTVHKGSRNNIGDVVYYLY
RDWLPNTSEQLGDLPCIFCYYNFDHEVAETELLTECWLLLK
>Mature_281_residues
MKYQQKLRNMIDFIGKHLDEELSLESLSEIFCISKFHFHRLFTAFTGLSLQQYIKWLRLKRAAHQLIVDKDQSVINIAIN
AGFESHEAFSRAFKKACGFSPSQFRQGFGRSYWEQPPYCLPGQSRTDMKVDIKSIDKIRLAVIEHKGDPKLLGESINKLV
SWAKSQSINLKPRAGEAFALAYDDPKTTPPSDFRIDLGIKVPENLKLDGVIEKFLPSGRYAVTVHKGSRNNIGDVVYYLY
RDWLPNTSEQLGDLPCIFCYYNFDHEVAETELLTECWLLLK

Specific function: Represses expression of mcbR [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=159, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 32332; Mature: 32332

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYQQKLRNMIDFIGKHLDEELSLESLSEIFCISKFHFHRLFTAFTGLSLQQYIKWLRLK
CCHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RAAHQLIVDKDQSVINIAINAGFESHEAFSRAFKKACGFSPSQFRQGFGRSYWEQPPYCL
HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHCCCCCCC
PGQSRTDMKVDIKSIDKIRLAVIEHKGDPKLLGESINKLVSWAKSQSINLKPRAGEAFAL
CCCCCCCCEEEHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
AYDDPKTTPPSDFRIDLGIKVPENLKLDGVIEKFLPSGRYAVTVHKGSRNNIGDVVYYLY
EECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
RDWLPNTSEQLGDLPCIFCYYNFDHEVAETELLTECWLLLK
HHHCCCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYQQKLRNMIDFIGKHLDEELSLESLSEIFCISKFHFHRLFTAFTGLSLQQYIKWLRLK
CCHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RAAHQLIVDKDQSVINIAINAGFESHEAFSRAFKKACGFSPSQFRQGFGRSYWEQPPYCL
HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHCCCCCCC
PGQSRTDMKVDIKSIDKIRLAVIEHKGDPKLLGESINKLVSWAKSQSINLKPRAGEAFAL
CCCCCCCCEEEHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
AYDDPKTTPPSDFRIDLGIKVPENLKLDGVIEKFLPSGRYAVTVHKGSRNNIGDVVYYLY
EECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
RDWLPNTSEQLGDLPCIFCYYNFDHEVAETELLTECWLLLK
HHHCCCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]