Click here to switch to the map view.

The map label for this gene is 52842316

Identifier: 52842316

GI number: 52842316

Start: 2350801

End: 2351682

Strand: Reverse

Name: 52842316

Synonym: lpg2102

Alternate gene names: NA

Gene position: 2351682-2350801 (Counterclockwise)

Preceding gene: 52842317

Following gene: 52842315

Centisome position: 69.21

GC content: 35.15

Gene sequence:

>882_bases
ATGTCTGAGATCAATTACAGTACAGTACAATATTACTTAGTACTCATTCTTATTTTTATTTATTTGTCATTGTTTGTTTT
AGAGAAAAAGTGGCCTTTAAGAAAAGCAACTCGCCCATTATTGCCGCGATTAGCAATTAATTTCACCTTTACCCTCTTGG
TTTATGTCATCGCAAGTCTGTTTATTAGCCCCTTAGCAAAAGCCACCGTCCTTTTCACCTTTAGCCATGATTTCGGCCTT
CTATCTATGCTTCCCTTTAATCAATGGGTAGTGTTTATACTTGGGTTTTTGTTAATGGATTTAAGCTTTTACTACTGGCA
TGCTCTAAATCATAAACTTCCGTTGTTGTGGCGATTCCATGTCGTGCATCACGCTGATCCTGACTTAGATGTTTCAACCG
CCATGCGTTTTCATTGTGTGGAAATTATGTATTCGAGTCTCTTTAGGTTGGTGCAATTAGGGTTGATTGGAGTGAGTCCC
TTACTCTTTTTTTGCTATGAATTTTTTTTTCAAGCACATACTTTTTTTCAACACAGCAATATCAAATTGCCTTTTCGCTT
TGAACGGCTAATTAATAAAATTATCGTTACTCCAAGAATGCATGGCATTCATCATTCCAATTATCTCAATGAAACCAATA
GTAATTATGGGGTTGTATTTTCATTTTGGGATAGGTTGCATCAAACAATCAAATTAGATATTCCCCAACAAGCTATAATA
ATTGGTGTACCTGGGTATTCCAAGCCATCAGATAATAGTCTTATACGGTTACTTTTGATGCCAATTAAAGCTCAACGCCA
CTATTGGCAAATAAAAAAGGATTTTCATTTTAGTCGAAAGTCAAAAACTTCTGATAAGAAAGTAAGAACGTTATGTGAAT
AA

Upstream 100 bases:

>100_bases
AGAAAAATGATTACTATGAATAAAGATAATTATAATTGGATTGACTTGAGCCATTTTTATAGGCAAGTTTATAGAAACAA
TTCACGAGCCTTTTAAACTA

Downstream 100 bases:

>100_bases
TGAAAAGGGCATCATCTTATGAAAATTAGTGCAATAAAAACTTGGCTGCCCTTATTAATTATAATAGTTTTATTAGGTCT
TTTTTTGGGTTTAGGCTTAA

Product: sterol desaturase

Products: NA

Alternate protein names: Sterol Desaturase; Sterol Desaturase-Like Protein; Sterol Desaturase-Related Protein; Sterol Desaturase Family Protein; C-5 Sterol Desaturase; Transmembrane Protein; Sterol Desaturase -Like Protein; Fatty Acid Hydroxylase Superfamily; YhhN Family Protein; Sterol Desaturate; TRAP Dicarboxylate Transporter DctM Subunit; Yhhn Family Protein; Fatty Acid Hydroxylase Superfamily Protein; YhhN-Like Protein; TRAP Dicarboxylate Transporter Subunit DctM; Sterol Desaturase Transmembrane Protein; Sterol Desaturase-Like; TRAP Dicarboxylate Transporter

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MSEINYSTVQYYLVLILIFIYLSLFVLEKKWPLRKATRPLLPRLAINFTFTLLVYVIASLFISPLAKATVLFTFSHDFGL
LSMLPFNQWVVFILGFLLMDLSFYYWHALNHKLPLLWRFHVVHHADPDLDVSTAMRFHCVEIMYSSLFRLVQLGLIGVSP
LLFFCYEFFFQAHTFFQHSNIKLPFRFERLINKIIVTPRMHGIHHSNYLNETNSNYGVVFSFWDRLHQTIKLDIPQQAII
IGVPGYSKPSDNSLIRLLLMPIKAQRHYWQIKKDFHFSRKSKTSDKKVRTLCE

Sequences:

>Translated_293_residues
MSEINYSTVQYYLVLILIFIYLSLFVLEKKWPLRKATRPLLPRLAINFTFTLLVYVIASLFISPLAKATVLFTFSHDFGL
LSMLPFNQWVVFILGFLLMDLSFYYWHALNHKLPLLWRFHVVHHADPDLDVSTAMRFHCVEIMYSSLFRLVQLGLIGVSP
LLFFCYEFFFQAHTFFQHSNIKLPFRFERLINKIIVTPRMHGIHHSNYLNETNSNYGVVFSFWDRLHQTIKLDIPQQAII
IGVPGYSKPSDNSLIRLLLMPIKAQRHYWQIKKDFHFSRKSKTSDKKVRTLCE
>Mature_292_residues
SEINYSTVQYYLVLILIFIYLSLFVLEKKWPLRKATRPLLPRLAINFTFTLLVYVIASLFISPLAKATVLFTFSHDFGLL
SMLPFNQWVVFILGFLLMDLSFYYWHALNHKLPLLWRFHVVHHADPDLDVSTAMRFHCVEIMYSSLFRLVQLGLIGVSPL
LFFCYEFFFQAHTFFQHSNIKLPFRFERLINKIIVTPRMHGIHHSNYLNETNSNYGVVFSFWDRLHQTIKLDIPQQAIII
GVPGYSKPSDNSLIRLLLMPIKAQRHYWQIKKDFHFSRKSKTSDKKVRTLCE

Specific function: Unknown

COG id: COG3000

COG function: function code I; Sterol desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34671; Mature: 34540

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEINYSTVQYYLVLILIFIYLSLFVLEKKWPLRKATRPLLPRLAINFTFTLLVYVIASL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISPLAKATVLFTFSHDFGLLSMLPFNQWVVFILGFLLMDLSFYYWHALNHKLPLLWRFH
HHHHHHHHEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEE
VVHHADPDLDVSTAMRFHCVEIMYSSLFRLVQLGLIGVSPLLFFCYEFFFQAHTFFQHSN
EHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IKLPFRFERLINKIIVTPRMHGIHHSNYLNETNSNYGVVFSFWDRLHQTIKLDIPQQAII
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHEEECCCCCEEE
IGVPGYSKPSDNSLIRLLLMPIKAQRHYWQIKKDFHFSRKSKTSDKKVRTLCE
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure 
SEINYSTVQYYLVLILIFIYLSLFVLEKKWPLRKATRPLLPRLAINFTFTLLVYVIASL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FISPLAKATVLFTFSHDFGLLSMLPFNQWVVFILGFLLMDLSFYYWHALNHKLPLLWRFH
HHHHHHHHEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEE
VVHHADPDLDVSTAMRFHCVEIMYSSLFRLVQLGLIGVSPLLFFCYEFFFQAHTFFQHSN
EHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IKLPFRFERLINKIIVTPRMHGIHHSNYLNETNSNYGVVFSFWDRLHQTIKLDIPQQAII
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHEEECCCCCEEE
IGVPGYSKPSDNSLIRLLLMPIKAQRHYWQIKKDFHFSRKSKTSDKKVRTLCE
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA