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The map label for this gene is traB [H]

Identifier: 52842303

GI number: 52842303

Start: 2340242

End: 2341561

Strand: Reverse

Name: traB [H]

Synonym: lpg2089

Alternate gene names: 52842303

Gene position: 2341561-2340242 (Counterclockwise)

Preceding gene: 52842304

Following gene: 52842302

Centisome position: 68.91

GC content: 41.82

Gene sequence:

>1320_bases
TTGAAACTACTCGATTGTACAGGATTAGCTAACATGTCTATTCAACTTAAAAAACAACAACAGATCTTTTTAGGGATTGT
TATCGGCGTTATAGTGTTGGTGATTGCGTGCTTTGCCTTATTGGGAAACAAGACAGTTAAATCCAGAGAGGTTGATAAAC
CCGCTTATAAAAAACACAGCTTAGCCAGCCCGATATCTACTGCCACTAATGAATCCCATTGGATTGAGAAAACACAAAAT
GCCTGGCGAGCTGAGCTTGCAAAATCAGAGCTCTTTGATAAAAACCTCAAGGCATTAGGTGATGAAAAAGACAAGCAAAG
CAAGCTCATTACCTCGCAAAAAGATGAACTATCTGAAATGAAATCCACACTTTCTGAATTAAAGCATCAAATAGTTAAGC
TACAAATGGAGCGTACTACCCCAATAGATGGGACATTAAAAAACAATGAGCCTCAAAATGGGTTGTTACCCCGAGCAGAT
GAAGCGGCAGCGAGCAACTCCATGGAGATGGATTCGGGATTTATTCAATACACAGCCAAGTTAAATAAAAAATCCAAGCC
ACGAATCAAAACACCCAATAATTATGTCTTCTCCAACACCTTTGCTAAAGCAGTTGTTTTACAAGGTGCAGATGCATCTG
CGGGAGTTTTAAGCCAAGCAAATCCCGACATTATGATATTTCAAATTGTCGATGATGGAGTGATGCCGAATAAATACAGG
GCACCACTTAAAGGCTGTATGGTAAGTGCTTCTGTAATTGGCGATATTTCCAGTGAGCGAGGAAAGTTTCGTACCGAACG
ATTAAGTTGCATTCATTCCAATGGCACCAATATCGACATCCAGGTTACAGGCATCATTTCAGATTCTAAAAACGGAATTC
GTGGGCGTGCGGTATGGCGTGATGAACCGATGGTGAAAAAAGCTTTTTGGGGGAACTTCTGGGAAAGCATGGGCAATATT
GGCCAGCAATATTCCACTGATTACAGCACCTCGCCTCTAGGAAGTGTATCAACCATTCAAGCAGGAAAAATTCCTCTCGC
GGCTGTTTCTAGTGGCGGATCGGGCGCTGCAAAAATGTATGCGCAATACAACATCAAGCGTGCTGAAATGTACCACCCGA
TTATTCAATTGCCTCCAATCGTTACAGTAGATGTAACTTTTCTTAAGGGTTTTTGGCTTGATGGGGGAACGGACACTAAT
GCCCCTGAACAACCAGAAGAAAGCCAAAATTCCAAAGTAGCTTTTGAAGCCCCTGCCGAGTCTGAGACTGCTGAAGAAAA
AGCTGCCAACCAATTTTTCTATAAAAACCACTCTTTCTAA

Upstream 100 bases:

>100_bases
TTAAAAAACGTAACCAACCAGCCTATTGATGCCAAGGAATCCTGGTTTAATTGGCCTGGAACCAAAGGGGTGGCGCTTGC
TAAAACCCATTTAGCGCCGT

Downstream 100 bases:

>100_bases
GGATATATAGATCATGAAAATTTTAACTACTTTATTACTGTTGCCCTGTGTTGTTTTGACCGGTTGCGCCAAATTGAATG
AGGACTTTGATTGCCCAGCT

Product: putative conjugative transfer protein TraB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MKLLDCTGLANMSIQLKKQQQIFLGIVIGVIVLVIACFALLGNKTVKSREVDKPAYKKHSLASPISTATNESHWIEKTQN
AWRAELAKSELFDKNLKALGDEKDKQSKLITSQKDELSEMKSTLSELKHQIVKLQMERTTPIDGTLKNNEPQNGLLPRAD
EAAASNSMEMDSGFIQYTAKLNKKSKPRIKTPNNYVFSNTFAKAVVLQGADASAGVLSQANPDIMIFQIVDDGVMPNKYR
APLKGCMVSASVIGDISSERGKFRTERLSCIHSNGTNIDIQVTGIISDSKNGIRGRAVWRDEPMVKKAFWGNFWESMGNI
GQQYSTDYSTSPLGSVSTIQAGKIPLAAVSSGGSGAAKMYAQYNIKRAEMYHPIIQLPPIVTVDVTFLKGFWLDGGTDTN
APEQPEESQNSKVAFEAPAESETAEEKAANQFFYKNHSF

Sequences:

>Translated_439_residues
MKLLDCTGLANMSIQLKKQQQIFLGIVIGVIVLVIACFALLGNKTVKSREVDKPAYKKHSLASPISTATNESHWIEKTQN
AWRAELAKSELFDKNLKALGDEKDKQSKLITSQKDELSEMKSTLSELKHQIVKLQMERTTPIDGTLKNNEPQNGLLPRAD
EAAASNSMEMDSGFIQYTAKLNKKSKPRIKTPNNYVFSNTFAKAVVLQGADASAGVLSQANPDIMIFQIVDDGVMPNKYR
APLKGCMVSASVIGDISSERGKFRTERLSCIHSNGTNIDIQVTGIISDSKNGIRGRAVWRDEPMVKKAFWGNFWESMGNI
GQQYSTDYSTSPLGSVSTIQAGKIPLAAVSSGGSGAAKMYAQYNIKRAEMYHPIIQLPPIVTVDVTFLKGFWLDGGTDTN
APEQPEESQNSKVAFEAPAESETAEEKAANQFFYKNHSF
>Mature_439_residues
MKLLDCTGLANMSIQLKKQQQIFLGIVIGVIVLVIACFALLGNKTVKSREVDKPAYKKHSLASPISTATNESHWIEKTQN
AWRAELAKSELFDKNLKALGDEKDKQSKLITSQKDELSEMKSTLSELKHQIVKLQMERTTPIDGTLKNNEPQNGLLPRAD
EAAASNSMEMDSGFIQYTAKLNKKSKPRIKTPNNYVFSNTFAKAVVLQGADASAGVLSQANPDIMIFQIVDDGVMPNKYR
APLKGCMVSASVIGDISSERGKFRTERLSCIHSNGTNIDIQVTGIISDSKNGIRGRAVWRDEPMVKKAFWGNFWESMGNI
GQQYSTDYSTSPLGSVSTIQAGKIPLAAVSSGGSGAAKMYAQYNIKRAEMYHPIIQLPPIVTVDVTFLKGFWLDGGTDTN
APEQPEESQNSKVAFEAPAESETAEEKAANQFFYKNHSF

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 48242; Mature: 48242

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLDCTGLANMSIQLKKQQQIFLGIVIGVIVLVIACFALLGNKTVKSREVDKPAYKKHS
CCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
LASPISTATNESHWIEKTQNAWRAELAKSELFDKNLKALGDEKDKQSKLITSQKDELSEM
HCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
KSTLSELKHQIVKLQMERTTPIDGTLKNNEPQNGLLPRADEAAASNSMEMDSGFIQYTAK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEE
LNKKSKPRIKTPNNYVFSNTFAKAVVLQGADASAGVLSQANPDIMIFQIVDDGVMPNKYR
CCCCCCCCCCCCCCEEEHHHHEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
APLKGCMVSASVIGDISSERGKFRTERLSCIHSNGTNIDIQVTGIISDSKNGIRGRAVWR
CCHHHHHHHHHHHHCCHHHCCCHHHHHHHHEECCCCEEEEEEEEEEECCCCCCCCCEEEC
DEPMVKKAFWGNFWESMGNIGQQYSTDYSTSPLGSVSTIQAGKIPLAAVSSGGSGAAKMY
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEECCCCCCHHHHH
AQYNIKRAEMYHPIIQLPPIVTVDVTFLKGFWLDGGTDTNAPEQPEESQNSKVAFEAPAE
HHHCCHHHHHHCCHHHCCCEEEEEEHHHEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
SETAEEKAANQFFYKNHSF
CHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKLLDCTGLANMSIQLKKQQQIFLGIVIGVIVLVIACFALLGNKTVKSREVDKPAYKKHS
CCEECCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
LASPISTATNESHWIEKTQNAWRAELAKSELFDKNLKALGDEKDKQSKLITSQKDELSEM
HCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
KSTLSELKHQIVKLQMERTTPIDGTLKNNEPQNGLLPRADEAAASNSMEMDSGFIQYTAK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEE
LNKKSKPRIKTPNNYVFSNTFAKAVVLQGADASAGVLSQANPDIMIFQIVDDGVMPNKYR
CCCCCCCCCCCCCCEEEHHHHEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
APLKGCMVSASVIGDISSERGKFRTERLSCIHSNGTNIDIQVTGIISDSKNGIRGRAVWR
CCHHHHHHHHHHHHCCHHHCCCHHHHHHHHEECCCCEEEEEEEEEEECCCCCCCCCEEEC
DEPMVKKAFWGNFWESMGNIGQQYSTDYSTSPLGSVSTIQAGKIPLAAVSSGGSGAAKMY
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEECCCCCCHHHHH
AQYNIKRAEMYHPIIQLPPIVTVDVTFLKGFWLDGGTDTNAPEQPEESQNSKVAFEAPAE
HHHCCHHHHHHCCHHHCCCEEEEEEHHHEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
SETAEEKAANQFFYKNHSF
CHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]