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The map label for this gene is traU

Identifier: 52842299

GI number: 52842299

Start: 2335389

End: 2336384

Strand: Reverse

Name: traU

Synonym: lpg2085

Alternate gene names: 52842299

Gene position: 2336384-2335389 (Counterclockwise)

Preceding gene: 52842300

Following gene: 52842298

Centisome position: 68.76

GC content: 44.08

Gene sequence:

>996_bases
ATGAAAGCCTTTTTTATTCTTATTGCTTTTTTAGCTTCTGGGTTGACCCAAGCAGGATCTTGTCATGGTCGTTTTGTAAA
TCCCATTACTGATGTCTGTTGGTCGTGTTTGTTCCCGTTCAGTTTAGGGCAAGCTAATCTCGTTTCCTCCAATCATTTGC
CAGACACTAAAAATCCCAAACTGCCTGTTTGTGAATGCCCAGGAAATCCTATACCGAGATTGGGATTAACAATGGGTTAT
TGGGAGCCTGTTAACTTAGTGGATGTAACCAGAACCCCATTTTGCTTAGTTAATTTAGGGGGAATTTCTTTAAATTTTGG
CAAGTATTACCGCAAAGGTGCGGTGGAAACAGATAGTAATTTATCCAATCAATCATTTTACCACGTGCACTGGTACAAGT
TCCCATTGATGTATTGGTTGAATGTGTTAACTGATGGGATTTGTGTTGAAAAAGGAGACTTTGACATTGCTTATCCGAGT
GAATTGGATGTGATGTGGAATGACGATGAGCTGGGTTTCGTCATTAATCCTGAGGCGGTATTGTTTGGTAGTTTACCCGC
ACAAGCGGCTTGCGCTGCTGATTCAAGTACCGCTTTATTGGGCAGTGCCATTGACAAACTCTTTTGGTGCGCAGGAGCTC
AGGGAAGCATGTACCCTTTAACGGGGCATGTGCAAGAACATGTTGGCGGGGTTCAGGCATCAGTCTTACTGTCTGAGCGT
ATGAATTTTAAACTGCACCGCCAGGGACTATTGGAAGACACAGTAGGACTTGACGATTCGACAAGCAGCGCAAAATCCAT
TTGTCATACTCATTATTCCCCTATTTTGCCCAAATCACGTTACCGCTATCAAATGGTCAATCCTTTACCGACTACTAATG
CCTGTTATCCCCTTGGGCGTGCTACGACCCTATGGGAGGCAGGGCACGAATATCCGTTTAAGGGCGAGGATTTTGGGTAT
CTGATCTGGCGCAAACGCAATTGTTGCGCCTTTTAA

Upstream 100 bases:

>100_bases
TTGATTTAAATGGATTTTTGGTTGCCAAATTTCAAATAAAGTATTTGCCGGCGCGGGTTTTTCAAGCAGGGAAGCGGTTG
CAAATTAATGAGGTGACTGT

Downstream 100 bases:

>100_bases
CGATTAGGAGATGTGATGAAAACAATACGAATGAACACTTCTTTCTTGGTTGCATTATTTTTGTTGTCATTTCCTGCACT
TGCAGAAGATGAAGCCTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKAFFILIAFLASGLTQAGSCHGRFVNPITDVCWSCLFPFSLGQANLVSSNHLPDTKNPKLPVCECPGNPIPRLGLTMGY
WEPVNLVDVTRTPFCLVNLGGISLNFGKYYRKGAVETDSNLSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPS
ELDVMWNDDELGFVINPEAVLFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMYPLTGHVQEHVGGVQASVLLSER
MNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPILPKSRYRYQMVNPLPTTNACYPLGRATTLWEAGHEYPFKGEDFGY
LIWRKRNCCAF

Sequences:

>Translated_331_residues
MKAFFILIAFLASGLTQAGSCHGRFVNPITDVCWSCLFPFSLGQANLVSSNHLPDTKNPKLPVCECPGNPIPRLGLTMGY
WEPVNLVDVTRTPFCLVNLGGISLNFGKYYRKGAVETDSNLSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPS
ELDVMWNDDELGFVINPEAVLFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMYPLTGHVQEHVGGVQASVLLSER
MNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPILPKSRYRYQMVNPLPTTNACYPLGRATTLWEAGHEYPFKGEDFGY
LIWRKRNCCAF
>Mature_331_residues
MKAFFILIAFLASGLTQAGSCHGRFVNPITDVCWSCLFPFSLGQANLVSSNHLPDTKNPKLPVCECPGNPIPRLGLTMGY
WEPVNLVDVTRTPFCLVNLGGISLNFGKYYRKGAVETDSNLSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPS
ELDVMWNDDELGFVINPEAVLFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMYPLTGHVQEHVGGVQASVLLSER
MNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPILPKSRYRYQMVNPLPTTNACYPLGRATTLWEAGHEYPFKGEDFGY
LIWRKRNCCAF

Specific function: Appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments. Required for F plasmid conjugative transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009649 [H]

Pfam domain/function: PF06834 TraU [H]

EC number: NA

Molecular weight: Translated: 36719; Mature: 36719

Theoretical pI: Translated: 6.49; Mature: 6.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFFILIAFLASGLTQAGSCHGRFVNPITDVCWSCLFPFSLGQANLVSSNHLPDTKNPK
CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
LPVCECPGNPIPRLGLTMGYWEPVNLVDVTRTPFCLVNLGGISLNFGKYYRKGAVETDSN
CCEEECCCCCCCCCCCEECCCCCCCEEEECCCCEEEEEECCEEEEHHHHHHCCCCCCCCC
LSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPSELDVMWNDDELGFVINPEAV
CCCCCEEEEEEEHHHHHHHHHHHCCCEEEECCCCCEECCCCEEEEECCCCCCEEECCCEE
LFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMYPLTGHVQEHVGGVQASVLLSER
EEECCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
MNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPILPKSRYRYQMVNPLPTTNACYPLGR
CCEEEHHCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
ATTLWEAGHEYPFKGEDFGYLIWRKRNCCAF
CHHHHHCCCCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MKAFFILIAFLASGLTQAGSCHGRFVNPITDVCWSCLFPFSLGQANLVSSNHLPDTKNPK
CHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
LPVCECPGNPIPRLGLTMGYWEPVNLVDVTRTPFCLVNLGGISLNFGKYYRKGAVETDSN
CCEEECCCCCCCCCCCEECCCCCCCEEEECCCCEEEEEECCEEEEHHHHHHCCCCCCCCC
LSNQSFYHVHWYKFPLMYWLNVLTDGICVEKGDFDIAYPSELDVMWNDDELGFVINPEAV
CCCCCEEEEEEEHHHHHHHHHHHCCCEEEECCCCCEECCCCEEEEECCCCCCEEECCCEE
LFGSLPAQAACAADSSTALLGSAIDKLFWCAGAQGSMYPLTGHVQEHVGGVQASVLLSER
EEECCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
MNFKLHRQGLLEDTVGLDDSTSSAKSICHTHYSPILPKSRYRYQMVNPLPTTNACYPLGR
CCEEEHHCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
ATTLWEAGHEYPFKGEDFGYLIWRKRNCCAF
CHHHHHCCCCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2198250; 7915817; 2050638; 1355084 [H]