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The map label for this gene is trbC [C]

Identifier: 52842298

GI number: 52842298

Start: 2334705

End: 2335376

Strand: Reverse

Name: trbC [C]

Synonym: lpg2084

Alternate gene names: 52842298

Gene position: 2335376-2334705 (Counterclockwise)

Preceding gene: 52842299

Following gene: 52842297

Centisome position: 68.73

GC content: 39.29

Gene sequence:

>672_bases
GTGATGAAAACAATACGAATGAACACTTCTTTCTTGGTTGCATTATTTTTGTTGTCATTTCCTGCACTTGCAGAAGATGA
AGCCTATATTGCGTCTATTGAGGCGAATACAAAAAATCGCGCCAATGCTTTTACAAATGAAATAAAGCAAATCAGTAAGT
CTCTTGAGACTTCAGAAAAATCGGGTCAAATTGCAGAATTTACCGGCGAGATGCATCAAGTCATAAAAACACAGGAGCCC
ATTGTAACCCACTTAAAAAAAGTCAGTCAGGTACTCGTGTTCTTATCGTTTTCAATGCCAGAAAAAAGTCTAAAAGCCTG
GCTTTTACAATGTAAAAAAAGTGGAGCAACACCTGTGATTCGGGGACTAATTCATAATTCGTTTAAAGAAACGATGACGG
CTATTCAAACGCTCAGTAAAAAAACAGGAATTGGGATGCAGCTTGATCCTATTCTTTTTAAAACCTTTGATATCGCTATG
GTTCCTGCAGTGGTTTATGTGAAAGACACCCCTGCTTGTCCTGCCAATATGGATTGCAAACCGGTGAGTTACGACAGTCT
TTATGGTGATGTATCGCTGGACTATGCTTTGGAAAAAATGAGGGGAGATGAGCAGTCAGAAGACCCCGTGTTGGATCAAA
TGATTCTTCGGTTAAGAGGGGAATTAATCTAA

Upstream 100 bases:

>100_bases
CCTATGGGAGGCAGGGCACGAATATCCGTTTAAGGGCGAGGATTTTGGGTATCTGATCTGGCGCAAACGCAATTGTTGCG
CCTTTTAACGATTAGGAGAT

Downstream 100 bases:

>100_bases
TGAAAGGCTTCGTTTTAGTTTTTTTAATCCTTTGTTCACAGGTTTTTGCACTTGATTTGAATCAGGCGTATCAAGAAGGC
GTTCAGACCGGAACAAGCCA

Product: putative conjugative transfer protein TrbC

Products: NA

Alternate protein names: Conjugative Transfer Protein Trbc; Conjugative Transfer Protein

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MMKTIRMNTSFLVALFLLSFPALAEDEAYIASIEANTKNRANAFTNEIKQISKSLETSEKSGQIAEFTGEMHQVIKTQEP
IVTHLKKVSQVLVFLSFSMPEKSLKAWLLQCKKSGATPVIRGLIHNSFKETMTAIQTLSKKTGIGMQLDPILFKTFDIAM
VPAVVYVKDTPACPANMDCKPVSYDSLYGDVSLDYALEKMRGDEQSEDPVLDQMILRLRGELI

Sequences:

>Translated_223_residues
MMKTIRMNTSFLVALFLLSFPALAEDEAYIASIEANTKNRANAFTNEIKQISKSLETSEKSGQIAEFTGEMHQVIKTQEP
IVTHLKKVSQVLVFLSFSMPEKSLKAWLLQCKKSGATPVIRGLIHNSFKETMTAIQTLSKKTGIGMQLDPILFKTFDIAM
VPAVVYVKDTPACPANMDCKPVSYDSLYGDVSLDYALEKMRGDEQSEDPVLDQMILRLRGELI
>Mature_223_residues
MMKTIRMNTSFLVALFLLSFPALAEDEAYIASIEANTKNRANAFTNEIKQISKSLETSEKSGQIAEFTGEMHQVIKTQEP
IVTHLKKVSQVLVFLSFSMPEKSLKAWLLQCKKSGATPVIRGLIHNSFKETMTAIQTLSKKTGIGMQLDPILFKTFDIAM
VPAVVYVKDTPACPANMDCKPVSYDSLYGDVSLDYALEKMRGDEQSEDPVLDQMILRLRGELI

Specific function: Essential For F Plasmid Conjugative Transfer, Participates In F-Pilus Assembly. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24889; Mature: 24889

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKTIRMNTSFLVALFLLSFPALAEDEAYIASIEANTKNRANAFTNEIKQISKSLETSEK
CCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
SGQIAEFTGEMHQVIKTQEPIVTHLKKVSQVLVFLSFSMPEKSLKAWLLQCKKSGATPVI
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
RGLIHNSFKETMTAIQTLSKKTGIGMQLDPILFKTFDIAMVPAVVYVKDTPACPANMDCK
HHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHCEEEEEECCCCCCCCCCCC
PVSYDSLYGDVSLDYALEKMRGDEQSEDPVLDQMILRLRGELI
CCCHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMKTIRMNTSFLVALFLLSFPALAEDEAYIASIEANTKNRANAFTNEIKQISKSLETSEK
CCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
SGQIAEFTGEMHQVIKTQEPIVTHLKKVSQVLVFLSFSMPEKSLKAWLLQCKKSGATPVI
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
RGLIHNSFKETMTAIQTLSKKTGIGMQLDPILFKTFDIAMVPAVVYVKDTPACPANMDCK
HHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHCEEEEEECCCCCCCCCCCC
PVSYDSLYGDVSLDYALEKMRGDEQSEDPVLDQMILRLRGELI
CCCHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA