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The map label for this gene is traF

Identifier: 52842295

GI number: 52842295

Start: 2331707

End: 2332129

Strand: Reverse

Name: traF

Synonym: lpg2081

Alternate gene names: 52842295

Gene position: 2332129-2331707 (Counterclockwise)

Preceding gene: 52842296

Following gene: 52842294

Centisome position: 68.64

GC content: 39.72

Gene sequence:

>423_bases
ATGCGCAATAAATTAGCTATTTTTCTAATATTAGGAACGTTATTTTCATCAAGCCTATACGCCGATATTGATAATGCACC
GCTTCATGCCCTTGCCAAACATCAAGGATTTTTCTTTTTTTTCAGTTCGAGTTGTCCTCATTGTCAACGCTTTGCACCCA
CGCTCAAACGCTTGAGTCAACACTATGGCTTTAGCGTAGTTGCTATTTCTGTTGATGGAGGCTTTTTACCATCCTTTCCT
GATGCGGTGATGAATGAAGGACAAACGAAGGTATTTCAAGTCAGTGTTTATCCTTCTCTTTTTTTGATTAACCCAAAGAG
CCAAGTGGCGAGTCTTGTTACTGAAGGCACTATTGATGAAGGCGAACTAACCAATCGGTTACTAAAAATTAGCCAGATAC
ATGACAAAGAGGTGCCTTTATGA

Upstream 100 bases:

>100_bases
TCTAAAAAAACCATGCCAGTTGCTTATGGCTTAGTCAGCCAGTCGGAATTGAAGGAAAACATTTTAATGGCAAGCAACGC
TTTTCAATCGGGAGATTACA

Downstream 100 bases:

>100_bases
AAAAAATTCTTCTGTCTTGTGGGTTAATCGGTGCACTTGGCATCGGACAAGTGTACAGCAAATCAATAGGTGAGGATTTA
ACTGGTTATTTTAAAGCTCT

Product: sex pilus assembly TraF, thiol-disulfide isomerase and thioredoxins

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MRNKLAIFLILGTLFSSSLYADIDNAPLHALAKHQGFFFFFSSSCPHCQRFAPTLKRLSQHYGFSVVAISVDGGFLPSFP
DAVMNEGQTKVFQVSVYPSLFLINPKSQVASLVTEGTIDEGELTNRLLKISQIHDKEVPL

Sequences:

>Translated_140_residues
MRNKLAIFLILGTLFSSSLYADIDNAPLHALAKHQGFFFFFSSSCPHCQRFAPTLKRLSQHYGFSVVAISVDGGFLPSFP
DAVMNEGQTKVFQVSVYPSLFLINPKSQVASLVTEGTIDEGELTNRLLKISQIHDKEVPL
>Mature_140_residues
MRNKLAIFLILGTLFSSSLYADIDNAPLHALAKHQGFFFFFSSSCPHCQRFAPTLKRLSQHYGFSVVAISVDGGFLPSFP
DAVMNEGQTKVFQVSVYPSLFLINPKSQVASLVTEGTIDEGELTNRLLKISQIHDKEVPL

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014110 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15507; Mature: 15507

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKLAIFLILGTLFSSSLYADIDNAPLHALAKHQGFFFFFSSSCPHCQRFAPTLKRLSQ
CCCCEEHHHHHHHHHCCHHEECCCCCCHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
HYGFSVVAISVDGGFLPSFPDAVMNEGQTKVFQVSVYPSLFLINPKSQVASLVTEGTIDE
HCCEEEEEEEECCCCCCCCCHHHHCCCCCEEEEEEECCEEEEECCHHHHHHHHHCCCCCH
GELTNRLLKISQIHDKEVPL
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRNKLAIFLILGTLFSSSLYADIDNAPLHALAKHQGFFFFFSSSCPHCQRFAPTLKRLSQ
CCCCEEHHHHHHHHHCCHHEECCCCCCHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH
HYGFSVVAISVDGGFLPSFPDAVMNEGQTKVFQVSVYPSLFLINPKSQVASLVTEGTIDE
HCCEEEEEEEECCCCCCCCCHHHHCCCCCEEEEEEECCEEEEECCHHHHHHHHHCCCCCH
GELTNRLLKISQIHDKEVPL
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3042757; 7915817; 1593622 [H]