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The map label for this gene is traF

Identifier: 52842296

GI number: 52842296

Start: 2332119

End: 2332901

Strand: Reverse

Name: traF

Synonym: lpg2082

Alternate gene names: 52842296

Gene position: 2332901-2332119 (Counterclockwise)

Preceding gene: 52842297

Following gene: 52842295

Centisome position: 68.66

GC content: 42.15

Gene sequence:

>783_bases
ATGGCTAGATGGTTTTTTGTTTTGTTGGTTAGCGTGAGTCCTTTTTTGTACGCCGAGCAGCCTTATCTTAATGAGCATGA
GGAAGGTTGGTATTGGCATAAGGATCCCAAAGAGGAAGTCAAGAATAAACCACAAACCGAGTCAGTGGCACCTTCACATG
TAAGTAAACCTGCCGATCCTGATAAAACATGGAAATTGATTGGTAATAGAGTGCAACAGGCTCGCGCACAAGCTATTTTA
AATCCAACTCCTGAAAATATTGCTCGTGCAAGACGATTACAACGATTGATTGTGGCACAGGCTAATCTGTTTTCTGAGAA
ATGGATGCTCGATCTGCTAATAAACCCCGATCAGGATGAAAGTCTTATTAATCCGAGCAGTAGTGCAGCACGTGATATCT
ACAACCAGCAAAACAGCATGCAAAAGGAAAAGGCGATTACTCAAATTAGTCAAACATCTGGTTTGTTGTATTTCTATGAA
GGTGGTGAACCATTTAGCGAGCGCATGGCCCAAGTAGTGAGTGATTTTGCGAACAGTTATCACATGACTGTTATTCCAAT
TGCCATGACCAATCGCATCTCCCCGATGTTACCTAACTCACGAGTTGATTCCGGTCAGGCAACTCAGATGGGTGTTAAAC
ACATTCCTGCGGTTTTTGCTCTTAATCCAGTATCTAAAAAAACCATGCCAGTTGCTTATGGCTTAGTCAGCCAGTCGGAA
TTGAAGGAAAACATTTTAATGGCAAGCAACGCTTTTCAATCGGGAGATTACAATGCGCAATAA

Upstream 100 bases:

>100_bases
TATGAGGAGGTAAAAAATAAACAAAAACAACCGGATTACCAACAGACTGCCAATGGAATAAGCCAGCGCCTTAATCAATT
TTACAATCAAGGAGACATCA

Downstream 100 bases:

>100_bases
ATTAGCTATTTTTCTAATATTAGGAACGTTATTTTCATCAAGCCTATACGCCGATATTGATAATGCACCGCTTCATGCCC
TTGCCAAACATCAAGGATTT

Product: pilus assembly protein TraF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MARWFFVLLVSVSPFLYAEQPYLNEHEEGWYWHKDPKEEVKNKPQTESVAPSHVSKPADPDKTWKLIGNRVQQARAQAIL
NPTPENIARARRLQRLIVAQANLFSEKWMLDLLINPDQDESLINPSSSAARDIYNQQNSMQKEKAITQISQTSGLLYFYE
GGEPFSERMAQVVSDFANSYHMTVIPIAMTNRISPMLPNSRVDSGQATQMGVKHIPAVFALNPVSKKTMPVAYGLVSQSE
LKENILMASNAFQSGDYNAQ

Sequences:

>Translated_260_residues
MARWFFVLLVSVSPFLYAEQPYLNEHEEGWYWHKDPKEEVKNKPQTESVAPSHVSKPADPDKTWKLIGNRVQQARAQAIL
NPTPENIARARRLQRLIVAQANLFSEKWMLDLLINPDQDESLINPSSSAARDIYNQQNSMQKEKAITQISQTSGLLYFYE
GGEPFSERMAQVVSDFANSYHMTVIPIAMTNRISPMLPNSRVDSGQATQMGVKHIPAVFALNPVSKKTMPVAYGLVSQSE
LKENILMASNAFQSGDYNAQ
>Mature_259_residues
ARWFFVLLVSVSPFLYAEQPYLNEHEEGWYWHKDPKEEVKNKPQTESVAPSHVSKPADPDKTWKLIGNRVQQARAQAILN
PTPENIARARRLQRLIVAQANLFSEKWMLDLLINPDQDESLINPSSSAARDIYNQQNSMQKEKAITQISQTSGLLYFYEG
GEPFSERMAQVVSDFANSYHMTVIPIAMTNRISPMLPNSRVDSGQATQMGVKHIPAVFALNPVSKKTMPVAYGLVSQSEL
KENILMASNAFQSGDYNAQ

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014110 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29344; Mature: 29212

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARWFFVLLVSVSPFLYAEQPYLNEHEEGWYWHKDPKEEVKNKPQTESVAPSHVSKPADP
CHHHHHHHHHHHCHHHEECCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCCHHCCCCCCC
DKTWKLIGNRVQQARAQAILNPTPENIARARRLQRLIVAQANLFSEKWMLDLLINPDQDE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCC
SLINPSSSAARDIYNQQNSMQKEKAITQISQTSGLLYFYEGGEPFSERMAQVVSDFANSY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCC
HMTVIPIAMTNRISPMLPNSRVDSGQATQMGVKHIPAVFALNPVSKKTMPVAYGLVSQSE
CEEEEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHH
LKENILMASNAFQSGDYNAQ
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ARWFFVLLVSVSPFLYAEQPYLNEHEEGWYWHKDPKEEVKNKPQTESVAPSHVSKPADP
HHHHHHHHHHHCHHHEECCCCCCCCCCCCEECCCCHHHHCCCCCCCCCCCHHCCCCCCC
DKTWKLIGNRVQQARAQAILNPTPENIARARRLQRLIVAQANLFSEKWMLDLLINPDQDE
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCC
SLINPSSSAARDIYNQQNSMQKEKAITQISQTSGLLYFYEGGEPFSERMAQVVSDFANSY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCC
HMTVIPIAMTNRISPMLPNSRVDSGQATQMGVKHIPAVFALNPVSKKTMPVAYGLVSQSE
CEEEEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHH
LKENILMASNAFQSGDYNAQ
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3042757; 7915817; 1593622 [H]