Click here to switch to the map view.

The map label for this gene is traD [H]

Identifier: 52842292

GI number: 52842292

Start: 2325174

End: 2327066

Strand: Reverse

Name: traD [H]

Synonym: lpg2078

Alternate gene names: 52842292

Gene position: 2327066-2325174 (Counterclockwise)

Preceding gene: 52842293

Following gene: 52842291

Centisome position: 68.49

GC content: 40.94

Gene sequence:

>1893_bases
ATGATGGCGGTAAATCCTACAAAATTATTTATTCGCGGCGGTCAAATCTTTTTGCACAATGTCCGCATGTTCACACAGGT
AGGTAAGAAAGTAAGCCTTGCTATGCTGATAGTTTTTTTTATTTTCTCAGTCATCGCTTTTTATTTTAATACCAGTGCGT
ATCAACGTTATATTGGCCAGCAATGGGTTAAAGCCCAGGCAATGACTTTAATACAGAGCAAAGCCAAGCAAGTGGTTCGC
ATGCCAACGGGTGAATCTTATCCAGTGTATTCAGCGCAAATTGTAAAAGCTCCCATGGTCATCGGCATTGTTAATCAATT
AAAACAAGCTCTACTTAAGAGCATGATAGAGGCACTATTTGCCTCTGTCATGATGTTAATTGTCATGGTTAAGTGGTTGC
AAAAAAGAGGGGAAAATCAAAGTAAAGCTAAGATCATTCGCGGCAGTGAGTTAGTTGATGAAAACACGTTACAAAAGTGC
ATCAAAAAGACAAGCAGGATTTCTCCTTATCGGATTGGTGGTGTATCTCTGCCCTTTGGTTCTGAAACCCAGCATATACA
AATAGTCGGAACCACCGGATCTGGTAAAACTGTTGCTATTCGTGATCTATTGACGACAATACAAGCTAGGGGTGAGCGCG
CGATTATTTATGATAAAGGAGGAACTTATTTATCCCGTTTTTATCGTGAACATCAAGATGTAATTTTAAATCCCTTAGAT
ACGAGAGGCCATTCCTGGAATGTCTGGGCAGAATGCGAAGACAAAGCAGATCTTGAAGCACTTGCTGAGGCCATCATGCC
GATGCCCATCAATAACACCATGGATCCCTTTTGGATTAAAGCCGCGCGTATGATTTTCGTCTCGACTGCCAATGAGCTAA
AAAATGATCCTAAACGCTCCAATCTGATGTTATTGCAATATTTGCTCACAGCAGACTTAGGTCGAATTCATCATTTACTG
CGTCATACTGAATCAGAATCTCTGGTATCCGATAAAGTACAAAAGACTGCTTTAAATGTGAAAACCGTAATGGCTACTTA
TTTAAAATCCTTACTGTATTTGAAAGATGATGGGGACATCTTTTCGATTCGCGACTGGATTTTGAATGAGCAGAATAATT
CCTGTTTGTTTGTCAGTTCTGATGGGCGCAAACACCCAACCATCAGACCACTAATTTCGGCCTGGATTAATACTGCTACC
AAAGAACTCTTAAGTTTAGCGCCTGATGATAACCGCCGTGTTTGGTTTATTTTGGATGAGCTGGCTACCTTGCATGCCTT
ACCTTTTTTAGCCGCAGTTAAATCAGAAAGTCGCAAATTTGGTGGTTGCTTCTTATTAGGTCATCACGGTGCATCCCAGT
TGCGTACCATTTATGGTAACGATGGTGCCGCGTCCCTTTCAAATCTGTGTTCGACTCGATTGTTCCTACGCTTACCCGAA
CATACTGATGCGGAGCACGCCTCCCGCAATATTGGTACATACGAAATTGAAGAGGTGAATGAGTCCATCAGTTATGGGGC
AAACACCATGCGTGATGGGATTTCAGTTTCTCGTCAAACTAAAGAAAAACAATTGGTTTTACCAACCCAAATTCAGGTAA
TCAATGATCTACAAGGATATTTGCGCGTCAAAGGGGAATTTCCTGCGGCAAAAATAAAGCTTAATTACGTTGATTATCCT
CTCATTCATGAAGAATTTATTGCACGAGACATTGATCCTGATCCACTTCGTCAAAAAGTAGAGCAATTGGTGGACACCTA
CAGCGATCCCATCCTTGCCGCATCCCATGATGATGCTTTAGAGGCTGCAACTTCAACAAAAAAAGATATCACAAAACCAA
TTGCAAGAGAAAAAAAGCTTGAGGAAGAAAAAGAGCTTGTTGAGTTTTTATAA

Upstream 100 bases:

>100_bases
GCTTATCATCACTTGCCCTTTATAGTTCTTCTCCATTGGATTTTCTCCTTTTTATTCATTGTAGCCTGATTTTCACTTTT
TTTATATCGATTCGGAGTCA

Downstream 100 bases:

>100_bases
GAACAAATTGGGGGGTAAGCATGTTAAGTCTTCAGCCATTAGACAGTGCCGATGGAGCCGCAGCCTACTATCTAGATGTC
GTCAATTATTATGAAAACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MMAVNPTKLFIRGGQIFLHNVRMFTQVGKKVSLAMLIVFFIFSVIAFYFNTSAYQRYIGQQWVKAQAMTLIQSKAKQVVR
MPTGESYPVYSAQIVKAPMVIGIVNQLKQALLKSMIEALFASVMMLIVMVKWLQKRGENQSKAKIIRGSELVDENTLQKC
IKKTSRISPYRIGGVSLPFGSETQHIQIVGTTGSGKTVAIRDLLTTIQARGERAIIYDKGGTYLSRFYREHQDVILNPLD
TRGHSWNVWAECEDKADLEALAEAIMPMPINNTMDPFWIKAARMIFVSTANELKNDPKRSNLMLLQYLLTADLGRIHHLL
RHTESESLVSDKVQKTALNVKTVMATYLKSLLYLKDDGDIFSIRDWILNEQNNSCLFVSSDGRKHPTIRPLISAWINTAT
KELLSLAPDDNRRVWFILDELATLHALPFLAAVKSESRKFGGCFLLGHHGASQLRTIYGNDGAASLSNLCSTRLFLRLPE
HTDAEHASRNIGTYEIEEVNESISYGANTMRDGISVSRQTKEKQLVLPTQIQVINDLQGYLRVKGEFPAAKIKLNYVDYP
LIHEEFIARDIDPDPLRQKVEQLVDTYSDPILAASHDDALEAATSTKKDITKPIAREKKLEEEKELVEFL

Sequences:

>Translated_630_residues
MMAVNPTKLFIRGGQIFLHNVRMFTQVGKKVSLAMLIVFFIFSVIAFYFNTSAYQRYIGQQWVKAQAMTLIQSKAKQVVR
MPTGESYPVYSAQIVKAPMVIGIVNQLKQALLKSMIEALFASVMMLIVMVKWLQKRGENQSKAKIIRGSELVDENTLQKC
IKKTSRISPYRIGGVSLPFGSETQHIQIVGTTGSGKTVAIRDLLTTIQARGERAIIYDKGGTYLSRFYREHQDVILNPLD
TRGHSWNVWAECEDKADLEALAEAIMPMPINNTMDPFWIKAARMIFVSTANELKNDPKRSNLMLLQYLLTADLGRIHHLL
RHTESESLVSDKVQKTALNVKTVMATYLKSLLYLKDDGDIFSIRDWILNEQNNSCLFVSSDGRKHPTIRPLISAWINTAT
KELLSLAPDDNRRVWFILDELATLHALPFLAAVKSESRKFGGCFLLGHHGASQLRTIYGNDGAASLSNLCSTRLFLRLPE
HTDAEHASRNIGTYEIEEVNESISYGANTMRDGISVSRQTKEKQLVLPTQIQVINDLQGYLRVKGEFPAAKIKLNYVDYP
LIHEEFIARDIDPDPLRQKVEQLVDTYSDPILAASHDDALEAATSTKKDITKPIAREKKLEEEKELVEFL
>Mature_630_residues
MMAVNPTKLFIRGGQIFLHNVRMFTQVGKKVSLAMLIVFFIFSVIAFYFNTSAYQRYIGQQWVKAQAMTLIQSKAKQVVR
MPTGESYPVYSAQIVKAPMVIGIVNQLKQALLKSMIEALFASVMMLIVMVKWLQKRGENQSKAKIIRGSELVDENTLQKC
IKKTSRISPYRIGGVSLPFGSETQHIQIVGTTGSGKTVAIRDLLTTIQARGERAIIYDKGGTYLSRFYREHQDVILNPLD
TRGHSWNVWAECEDKADLEALAEAIMPMPINNTMDPFWIKAARMIFVSTANELKNDPKRSNLMLLQYLLTADLGRIHHLL
RHTESESLVSDKVQKTALNVKTVMATYLKSLLYLKDDGDIFSIRDWILNEQNNSCLFVSSDGRKHPTIRPLISAWINTAT
KELLSLAPDDNRRVWFILDELATLHALPFLAAVKSESRKFGGCFLLGHHGASQLRTIYGNDGAASLSNLCSTRLFLRLPE
HTDAEHASRNIGTYEIEEVNESISYGANTMRDGISVSRQTKEKQLVLPTQIQVINDLQGYLRVKGEFPAAKIKLNYVDYP
LIHEEFIARDIDPDPLRQKVEQLVDTYSDPILAASHDDALEAATSTKKDITKPIAREKKLEEEKELVEFL

Specific function: TraD is a cell envelope protein. The function of traD is unknown but it is essential for DNA transfer. It may form or may be part of a non-specific pore for DNA export, or it may directly energize DNA transport [H]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To traD of plasmid IncFII R100 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014128
- InterPro:   IPR019476
- InterPro:   IPR022585 [H]

Pfam domain/function: PF12615 TraD_N; PF10412 TrwB_AAD_bind [H]

EC number: NA

Molecular weight: Translated: 71139; Mature: 71139

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAVNPTKLFIRGGQIFLHNVRMFTQVGKKVSLAMLIVFFIFSVIAFYFNTSAYQRYIGQ
CCCCCCEEEEEECCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
QWVKAQAMTLIQSKAKQVVRMPTGESYPVYSAQIVKAPMVIGIVNQLKQALLKSMIEALF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVMMLIVMVKWLQKRGENQSKAKIIRGSELVDENTLQKCIKKTSRISPYRIGGVSLPFG
HHHHHHHHHHHHHHHHCCCCCHHHEECCCHHCCHHHHHHHHHHHHCCCCEEECCEECCCC
SETQHIQIVGTTGSGKTVAIRDLLTTIQARGERAIIYDKGGTYLSRFYREHQDVILNPLD
CCCCEEEEEEECCCCCEEHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC
TRGHSWNVWAECEDKADLEALAEAIMPMPINNTMDPFWIKAARMIFVSTANELKNDPKRS
CCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEECHHHHCCCCCHH
NLMLLQYLLTADLGRIHHLLRHTESESLVSDKVQKTALNVKTVMATYLKSLLYLKDDGDI
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCE
FSIRDWILNEQNNSCLFVSSDGRKHPTIRPLISAWINTATKELLSLAPDDNRRVWFILDE
EEEHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
LATLHALPFLAAVKSESRKFGGCFLLGHHGASQLRTIYGNDGAASLSNLCSTRLFLRLPE
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHEEECCCCHHHHHHHHHHHHHEECCC
HTDAEHASRNIGTYEIEEVNESISYGANTMRDGISVSRQTKEKQLVLPTQIQVINDLQGY
CCCHHHHHCCCCCEEHHHHHHHHHCCCHHHHHCCHHHHHCCCCCEECCHHHHHHHHHHHH
LRVKGEFPAAKIKLNYVDYPLIHEEFIARDIDPDPLRQKVEQLVDTYSDPILAASHDDAL
EEECCCCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHH
EAATSTKKDITKPIAREKKLEEEKELVEFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MMAVNPTKLFIRGGQIFLHNVRMFTQVGKKVSLAMLIVFFIFSVIAFYFNTSAYQRYIGQ
CCCCCCEEEEEECCEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
QWVKAQAMTLIQSKAKQVVRMPTGESYPVYSAQIVKAPMVIGIVNQLKQALLKSMIEALF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASVMMLIVMVKWLQKRGENQSKAKIIRGSELVDENTLQKCIKKTSRISPYRIGGVSLPFG
HHHHHHHHHHHHHHHHCCCCCHHHEECCCHHCCHHHHHHHHHHHHCCCCEEECCEECCCC
SETQHIQIVGTTGSGKTVAIRDLLTTIQARGERAIIYDKGGTYLSRFYREHQDVILNPLD
CCCCEEEEEEECCCCCEEHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCC
TRGHSWNVWAECEDKADLEALAEAIMPMPINNTMDPFWIKAARMIFVSTANELKNDPKRS
CCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEECHHHHCCCCCHH
NLMLLQYLLTADLGRIHHLLRHTESESLVSDKVQKTALNVKTVMATYLKSLLYLKDDGDI
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCE
FSIRDWILNEQNNSCLFVSSDGRKHPTIRPLISAWINTATKELLSLAPDDNRRVWFILDE
EEEHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
LATLHALPFLAAVKSESRKFGGCFLLGHHGASQLRTIYGNDGAASLSNLCSTRLFLRLPE
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHEEECCCCHHHHHHHHHHHHHEECCC
HTDAEHASRNIGTYEIEEVNESISYGANTMRDGISVSRQTKEKQLVLPTQIQVINDLQGY
CCCHHHHHCCCCCEEHHHHHHHHHCCCHHHHHCCHHHHHCCCCCEECCHHHHHHHHHHHH
LRVKGEFPAAKIKLNYVDYPLIHEEFIARDIDPDPLRQKVEQLVDTYSDPILAASHDDAL
EEECCCCCEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHH
EAATSTKKDITKPIAREKKLEEEKELVEFL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2680768; 7915817; 10464182; 3323526; 2164585; 2163400; 1618779; 10498725 [H]