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The map label for this gene is ydfM [H]

Identifier: 52842251

GI number: 52842251

Start: 2278577

End: 2279740

Strand: Direct

Name: ydfM [H]

Synonym: lpg2034

Alternate gene names: 52842251

Gene position: 2278577-2279740 (Clockwise)

Preceding gene: 52842250

Following gene: 52842252

Centisome position: 67.06

GC content: 39.95

Gene sequence:

>1164_bases
GTGATTGAAAAAGGAACAACAATGTACCCCCATGACAGGTATTGGCAAGCCAAAAAAGTGACCCTTATCGGTGCTTTTAT
TAATGCCTTACTCGGTGTTGTCAAAATGATTGGTGGTTTTTTATATCATTCTCATGCTCTCATCGCGGATGGAGTCCACT
CCATTTCTGATTTAATTACTGATGTGACGGTTGTATTTGCTTCAAAATATGGAAGCGTTAGCGCTGATGACTCTCATCCA
TATGGCCATCAAAGAATTGAAACGGCAGCAACTTTATTGCTTTCCCTTTTACTAATCCTAGCAGGCTGTGGGATTGCCTG
GGATGCACTTGACGAATTGCTTAAATCAGACCATACCATGCCAAACTGGTTATCTATTCCTATAGTGTGCTTCTCAATCA
TTGCAAACGAAGCATTATTTCACTACACCCGCCATGTAGGAAAAAAAATTAGCTCCCAATTAATCACCGCCAATGCCTGG
CATCATCGATCAGATGCTGCTTCATCCATAGTCGTGCTGATTGGATTAATTGGCAGCTTGGCAGGGCTTGTTTACCTGGA
TGCCATTGCCGCCGTCATCGTAAGCCTGATGATTATAAAAATGGGGTGGAGCTATGGCTGGAACAGTGTCAAAGAGTTGG
TAGACACAGCTGTTGACGCAGAATTATTTTCTCAAATTGAACGAGTTATACAAAGCATTGATGGAGTAAAGCGTATTCAC
CAATTGAGAAGCCGGTTTATGGGTAGTGATGTGCTTATTGATGTCCATATTCTGGTTTCACCCAAAATATCCGTTTCCGA
GGGGCACTATATCGCTCAACATGTGCATCATACTCTGGTAAAAGAAATTGATTGCGTCAAAGATGTGATTGTCCATGTTG
ACCCTGAAGACGATGAAATTTCATGTCCATCCTTGCATTTACCAAACAGGGCAATACTCCAGGAAAAATTTTTTAATGAC
ATTCGCCATGATTTTCCCCAGATTTTATTTTGGAATATACATTATTTAAATGGAAAAATGAGTTTGGATATTTTTTGCTC
AAATGATTTTAATCAATGGAAAAAATTGCATAATCGAGTAATCTCAACCCTGAAATCACAAATCGATATAAAGGAAGTGC
GCCTCTTTGGCTTGCATGAGGAAATGCATCATCCATCAAACTAA

Upstream 100 bases:

>100_bases
AGTCGACTATAACTGACAGCACGAGATAAATAGGAACTCATGCTATAACATGGTATAGTTTCCCTTCTAATTTTTATTTA
CAAAAATCTAAATTATTTTT

Downstream 100 bases:

>100_bases
TATCCAGAAGGCATGCAAGAATTGCTAAATTTTAACAATGTAATACTGCTGTGCACTGTAGATTCGATTAGTCATTTCAG
GATAATATATACGCATTTTA

Product: cation efflux family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MIEKGTTMYPHDRYWQAKKVTLIGAFINALLGVVKMIGGFLYHSHALIADGVHSISDLITDVTVVFASKYGSVSADDSHP
YGHQRIETAATLLLSLLLILAGCGIAWDALDELLKSDHTMPNWLSIPIVCFSIIANEALFHYTRHVGKKISSQLITANAW
HHRSDAASSIVVLIGLIGSLAGLVYLDAIAAVIVSLMIIKMGWSYGWNSVKELVDTAVDAELFSQIERVIQSIDGVKRIH
QLRSRFMGSDVLIDVHILVSPKISVSEGHYIAQHVHHTLVKEIDCVKDVIVHVDPEDDEISCPSLHLPNRAILQEKFFND
IRHDFPQILFWNIHYLNGKMSLDIFCSNDFNQWKKLHNRVISTLKSQIDIKEVRLFGLHEEMHHPSN

Sequences:

>Translated_387_residues
MIEKGTTMYPHDRYWQAKKVTLIGAFINALLGVVKMIGGFLYHSHALIADGVHSISDLITDVTVVFASKYGSVSADDSHP
YGHQRIETAATLLLSLLLILAGCGIAWDALDELLKSDHTMPNWLSIPIVCFSIIANEALFHYTRHVGKKISSQLITANAW
HHRSDAASSIVVLIGLIGSLAGLVYLDAIAAVIVSLMIIKMGWSYGWNSVKELVDTAVDAELFSQIERVIQSIDGVKRIH
QLRSRFMGSDVLIDVHILVSPKISVSEGHYIAQHVHHTLVKEIDCVKDVIVHVDPEDDEISCPSLHLPNRAILQEKFFND
IRHDFPQILFWNIHYLNGKMSLDIFCSNDFNQWKKLHNRVISTLKSQIDIKEVRLFGLHEEMHHPSN
>Mature_387_residues
MIEKGTTMYPHDRYWQAKKVTLIGAFINALLGVVKMIGGFLYHSHALIADGVHSISDLITDVTVVFASKYGSVSADDSHP
YGHQRIETAATLLLSLLLILAGCGIAWDALDELLKSDHTMPNWLSIPIVCFSIIANEALFHYTRHVGKKISSQLITANAW
HHRSDAASSIVVLIGLIGSLAGLVYLDAIAAVIVSLMIIKMGWSYGWNSVKELVDTAVDAELFSQIERVIQSIDGVKRIH
QLRSRFMGSDVLIDVHILVSPKISVSEGHYIAQHVHHTLVKEIDCVKDVIVHVDPEDDEISCPSLHLPNRAILQEKFFND
IRHDFPQILFWNIHYLNGKMSLDIFCSNDFNQWKKLHNRVISTLKSQIDIKEVRLFGLHEEMHHPSN

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]

Homologues:

Organism=Escherichia coli, GI1790349, Length=267, Percent_Identity=24.3445692883895, Blast_Score=92, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6325032, Length=247, Percent_Identity=31.9838056680162, Blast_Score=124, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6323831, Length=247, Percent_Identity=29.1497975708502, Blast_Score=113, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002524 [H]

Pfam domain/function: PF01545 Cation_efflux [H]

EC number: NA

Molecular weight: Translated: 43442; Mature: 43442

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKGTTMYPHDRYWQAKKVTLIGAFINALLGVVKMIGGFLYHSHALIADGVHSISDLIT
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVTVVFASKYGSVSADDSHPYGHQRIETAATLLLSLLLILAGCGIAWDALDELLKSDHTM
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
PNWLSIPIVCFSIIANEALFHYTRHVGKKISSQLITANAWHHRSDAASSIVVLIGLIGSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AGLVYLDAIAAVIVSLMIIKMGWSYGWNSVKELVDTAVDAELFSQIERVIQSIDGVKRIH
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRSRFMGSDVLIDVHILVSPKISVSEGHYIAQHVHHTLVKEIDCVKDVIVHVDPEDDEI
HHHHHHCCCCEEEEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC
SCPSLHLPNRAILQEKFFNDIRHDFPQILFWNIHYLNGKMSLDIFCSNDFNQWKKLHNRV
CCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCEEEEEEEECCCHHHHHHHHHHH
ISTLKSQIDIKEVRLFGLHEEMHHPSN
HHHHHHHCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIEKGTTMYPHDRYWQAKKVTLIGAFINALLGVVKMIGGFLYHSHALIADGVHSISDLIT
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVTVVFASKYGSVSADDSHPYGHQRIETAATLLLSLLLILAGCGIAWDALDELLKSDHTM
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
PNWLSIPIVCFSIIANEALFHYTRHVGKKISSQLITANAWHHRSDAASSIVVLIGLIGSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
AGLVYLDAIAAVIVSLMIIKMGWSYGWNSVKELVDTAVDAELFSQIERVIQSIDGVKRIH
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLRSRFMGSDVLIDVHILVSPKISVSEGHYIAQHVHHTLVKEIDCVKDVIVHVDPEDDEI
HHHHHHCCCCEEEEEEEEECCCEECCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCC
SCPSLHLPNRAILQEKFFNDIRHDFPQILFWNIHYLNGKMSLDIFCSNDFNQWKKLHNRV
CCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCEEEEEEEECCCHHHHHHHHHHH
ISTLKSQIDIKEVRLFGLHEEMHHPSN
HHHHHHHCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]