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The map label for this gene is yggS [C]

Identifier: 52842231

GI number: 52842231

Start: 2254420

End: 2255115

Strand: Direct

Name: yggS [C]

Synonym: lpg2014

Alternate gene names: 52842231

Gene position: 2254420-2255115 (Clockwise)

Preceding gene: 52842229

Following gene: 52842232

Centisome position: 66.35

GC content: 38.07

Gene sequence:

>696_bases
ATGAGCATTAGTCAGAACATAAACAAAGTAAGAGAACTGATAACCCAGACAGAATCATCCAGTAACAGGCAACCGAACAG
CGTCTTATTATTGGCTGTTAGTAAAGAACAAAGCCCCGAATTAATCAGAGAAGCATTCCAACAAGGGATAAGACACTTTG
GTGAAAACTATTTTCAAGAAGCCCAGGAAAAAATATTGGCATTAAGAGATCTGCCTATCTGTTGGCATTTTATAGGGCCT
ATCCAAAGTAATAAAACCAAAGGAATAGCGAAATATTTTAATTGGGTTCACAGCATTGACCGAAATAAAACAGCCAAACT
TCTTAACCAGTTCAGATCTGAGCAACTACCACCGCTCAATGTCTGTTTACAAATTAATTTGACTGGAGAAACTACAAAAT
CAGGCATTCCTCCAGAACATGCCATCGACCTTGCTCTCGAAGTAAAGCAATTGCCTAATTTGCAGCTAAGGGGACTGATG
ACAATCCCTCCTCAGCAAAACAACATGCAAACACAGTACAATTTATTCCTTAAACTCAATCAACTCAAGGAATCCATCAA
TAAGGCACTTCATTTAAAAATGGATACTTTATCAATGGGTATGAGTGATGATTTGGTTCCGGCAATTAAAGCAGGTTCGA
CCATAGTTCGAATTGGACGAGCAATTTTTGGCGAACGAAAAGGTAAATTATTATGA

Upstream 100 bases:

>100_bases
GCAATCATGGATATCTTTTTGTAGTACCATTACACTTCATGCATAATTAATATTTCTTTTTATAATAAAGCGCCTCATCT
TTTGATTAGCCGGGATTAAT

Downstream 100 bases:

>100_bases
ATATCAGTTTTATTGGTTATGGGAATATGGCGAAAGCAATTGCCTGCCACTTACAAAAGCAAAATAAATACTCATTGTCA
GCTGCCTCACCATCCTTATC

Product: pyridoxal-5'-phosphate dependent enzyme family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQEAQEKILALRDLPICWHFIGP
IQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLNVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLM
TIPPQQNNMQTQYNLFLKLNQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL

Sequences:

>Translated_231_residues
MSISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQEAQEKILALRDLPICWHFIGP
IQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLNVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLM
TIPPQQNNMQTQYNLFLKLNQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL
>Mature_230_residues
SISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQEAQEKILALRDLPICWHFIGPI
QSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLNVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMT
IPPQQNNMQTQYNLFLKLNQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=210, Percent_Identity=39.0476190476191, Blast_Score=118, Evalue=5e-27,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=44.9339207048458, Blast_Score=197, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI17533025, Length=214, Percent_Identity=40.6542056074766, Blast_Score=131, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6319435, Length=230, Percent_Identity=38.2608695652174, Blast_Score=112, Evalue=4e-26,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=41.2037037037037, Blast_Score=127, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26166; Mature: 26035

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQE
CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AQEKILALRDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLN
HHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
VCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYNLFLKLN
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECEEEECCCCCCCCCHHHHHHHHHH
QLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQE
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AQEKILALRDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLN
HHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
VCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYNLFLKLN
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECEEEECCCCCCCCCHHHHHHHHHH
QLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]