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The map label for this gene is tdcF [C]

Identifier: 52842225

GI number: 52842225

Start: 2247452

End: 2247838

Strand: Reverse

Name: tdcF [C]

Synonym: lpg2008

Alternate gene names: 52842225

Gene position: 2247838-2247452 (Counterclockwise)

Preceding gene: 52842226

Following gene: 52842224

Centisome position: 66.16

GC content: 40.57

Gene sequence:

>387_bases
ATGCAACCAATCAATACAAAATTGGCGCCAAAAGCGATAGGCACGTACAGTCAAGCGATAAAAAGTGGTGAGATCGTTTT
TCTTTCAGGGCAGATCCCATTAGATCCTGAAACAATGCAAATCTGCAGCGATGATATTAAATTACAAATTACTCAAGTCC
TGGAAAATTTATCAGCTGTATGTGAAGAGGCTGGTGGTAGTCTGGCCAATATTGTCAAATTAAACGTCTATCTCACTGAT
TTAAGTCATTTTCCCTTAATTAACGAAGCGATGAGTCGATATTTTTCAGAGCCTTATCCTGCAAGAGCGGCAATCGAAGT
CTCCGCATTACCAAAGGGTGCCAAGGTTGAAATGGATGGGATTCTGGTTTTGTCTGAATCCGCATAA

Upstream 100 bases:

>100_bases
TCAGTGTTCGCGACAGAACCCATTTGGCTCGAGTCATGCGTCGATTAAGGGCAAATAAAGTAGTTATGCGGTTATATCGA
AAAAAACAAGGGGAGATTTA

Downstream 100 bases:

>100_bases
TCATGAGTGATGATCAATACGCTCGCACAGGGCGTCTGATGTTCTTATTTGTTTGGATTATATTTTTTATAGGGTTGTTT
TTATTCTTTTACTATTACGA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MQPINTKLAPKAIGTYSQAIKSGEIVFLSGQIPLDPETMQICSDDIKLQITQVLENLSAVCEEAGGSLANIVKLNVYLTD
LSHFPLINEAMSRYFSEPYPARAAIEVSALPKGAKVEMDGILVLSESA

Sequences:

>Translated_128_residues
MQPINTKLAPKAIGTYSQAIKSGEIVFLSGQIPLDPETMQICSDDIKLQITQVLENLSAVCEEAGGSLANIVKLNVYLTD
LSHFPLINEAMSRYFSEPYPARAAIEVSALPKGAKVEMDGILVLSESA
>Mature_128_residues
MQPINTKLAPKAIGTYSQAIKSGEIVFLSGQIPLDPETMQICSDDIKLQITQVLENLSAVCEEAGGSLANIVKLNVYLTD
LSHFPLINEAMSRYFSEPYPARAAIEVSALPKGAKVEMDGILVLSESA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=120, Percent_Identity=39.1666666666667, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=42.4, Blast_Score=100, Evalue=4e-23,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=38.4, Blast_Score=95, Evalue=1e-21,
Organism=Escherichia coli, GI1787245, Length=111, Percent_Identity=31.5315315315315, Blast_Score=63, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=42.4, Blast_Score=108, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=42.4, Blast_Score=108, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=42.4, Blast_Score=107, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=38.2113821138211, Blast_Score=96, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=37.2549019607843, Blast_Score=83, Evalue=1e-17,
Organism=Drosophila melanogaster, GI19921376, Length=118, Percent_Identity=35.5932203389831, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13782; Mature: 13782

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPINTKLAPKAIGTYSQAIKSGEIVFLSGQIPLDPETMQICSDDIKLQITQVLENLSAV
CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEHHHHHHHHHHHH
CEEAGGSLANIVKLNVYLTDLSHFPLINEAMSRYFSEPYPARAAIEVSALPKGAKVEMDG
HHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECE
ILVLSESA
EEEEECCC
>Mature Secondary Structure
MQPINTKLAPKAIGTYSQAIKSGEIVFLSGQIPLDPETMQICSDDIKLQITQVLENLSAV
CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCEEHHHHHHHHHHHH
CEEAGGSLANIVKLNVYLTDLSHFPLINEAMSRYFSEPYPARAAIEVSALPKGAKVEMDG
HHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECE
ILVLSESA
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]