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The map label for this gene is yngJ [H]

Identifier: 52842158

GI number: 52842158

Start: 2169139

End: 2170266

Strand: Reverse

Name: yngJ [H]

Synonym: lpg1941

Alternate gene names: 52842158

Gene position: 2170266-2169139 (Counterclockwise)

Preceding gene: 52842159

Following gene: 52842157

Centisome position: 63.87

GC content: 39.27

Gene sequence:

>1128_bases
TTGCCCAACTATCAGCCTCGACAAGTGAAAAAACAACAGTTCTTTAATCAATTCATAGAAAATTGTCTTCACCCTCATGC
AAAAAAATTTGATAAAGAACAAAACATTCCGCGCGATTTTTTTTATACGTTGGCTCAAAATGGTTTTTTGGGCGCTTGCA
TTCCCAAACAATTTGGCGGGCAACAATGGGATGAATTGACCATCGGTATCATGTATGAATCCTTTGCTAAAGAGCTTTGT
TCTTTGGCAAATATCCTAACAGTATTGGGCATGGTGAGTAAGTCACTTTTGCAGTTTGGTTCAAAAGCACAGAAGCAAAT
CTGGTTACCCCGGATTGCCTCAGGAGAAACTTTAGCTGCATTAGCTTTAACAGAACCTAATATAGGCAGCGATTTGGAAC
ATGTTGAAACTCAGTTGTTGGATGCAGGTGATGAGTTCATTCTAAATGGCAGTAAAAAATACATTACCTTAGGGCAAATA
GCGGATTTGTTTTTGGTTTTGGCAAATTGCCAGGGTCAACCTACTGCGGTTTTAGTTGAAAAAGGCACGCCAGGTTTAAT
TATTTCACCCATGTCTAATTTTTTAGGTTTACGCTCTAATATGCTGGCAGAGATTTTTTTTGATAATTGCCGAATTCCTA
AAACAAATCTGCTGGGTAGTATTGGTGTCGGTTTTACCTATGTTATCCAAACTGCTTTAGATGAAGGACGTTATACAACA
GCGTATGGATGTGTTGGTTTAGGGCAAGCTTGCCTGGATGCGGCTCTTGGCTATACTCAAGAAAGAAAACAATTCAATCG
CAGGTTAGACGAACATCAGCTCATTCAAAAAATGATAACTGAAATGGTGGTGCAGGTTAAAGCCGCCCGGGAATTGTGTT
TTTATGCCGGAGAACTTAGGCAAAAAAAAAATCCAGCATACATAGCTGAAACATTAATAGCAAAATACGCGGCTTCAAAA
ATGGTCGTTTTTGTATCTAACCATGCACTGCAGCTGTTTGGCGCAGCTGGTTTTGATGAAACCTATCCTGTTGAGAGATA
TTACAGAGATGCTAAGGTAATGGAGATCATTGAAGGAACTTCGCAAATGCACGAGATACTCATTTCGAAACTTTGCATCA
ATAAATAG

Upstream 100 bases:

>100_bases
ATTAAAAAATATGGTCGATGCAGGGCTTCTTGGACAAAAAACAAAAAAAGGATTTTATCAATATGAGTAGAATTGCAAAC
AGCCACTAAGGAGAGGAATT

Downstream 100 bases:

>100_bases
AGGATATTATTAAACAATGAGATCTCCTGATCAGGACACGACAATTTGCTCCTTATTTGAGGAGAAGGTAAAGCAATATC
CAGAAAATACAGCGGTTTAT

Product: acyl CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPNYQPRQVKKQQFFNQFIENCLHPHAKKFDKEQNIPRDFFYTLAQNGFLGACIPKQFGGQQWDELTIGIMYESFAKELC
SLANILTVLGMVSKSLLQFGSKAQKQIWLPRIASGETLAALALTEPNIGSDLEHVETQLLDAGDEFILNGSKKYITLGQI
ADLFLVLANCQGQPTAVLVEKGTPGLIISPMSNFLGLRSNMLAEIFFDNCRIPKTNLLGSIGVGFTYVIQTALDEGRYTT
AYGCVGLGQACLDAALGYTQERKQFNRRLDEHQLIQKMITEMVVQVKAARELCFYAGELRQKKNPAYIAETLIAKYAASK
MVVFVSNHALQLFGAAGFDETYPVERYYRDAKVMEIIEGTSQMHEILISKLCINK

Sequences:

>Translated_375_residues
MPNYQPRQVKKQQFFNQFIENCLHPHAKKFDKEQNIPRDFFYTLAQNGFLGACIPKQFGGQQWDELTIGIMYESFAKELC
SLANILTVLGMVSKSLLQFGSKAQKQIWLPRIASGETLAALALTEPNIGSDLEHVETQLLDAGDEFILNGSKKYITLGQI
ADLFLVLANCQGQPTAVLVEKGTPGLIISPMSNFLGLRSNMLAEIFFDNCRIPKTNLLGSIGVGFTYVIQTALDEGRYTT
AYGCVGLGQACLDAALGYTQERKQFNRRLDEHQLIQKMITEMVVQVKAARELCFYAGELRQKKNPAYIAETLIAKYAASK
MVVFVSNHALQLFGAAGFDETYPVERYYRDAKVMEIIEGTSQMHEILISKLCINK
>Mature_374_residues
PNYQPRQVKKQQFFNQFIENCLHPHAKKFDKEQNIPRDFFYTLAQNGFLGACIPKQFGGQQWDELTIGIMYESFAKELCS
LANILTVLGMVSKSLLQFGSKAQKQIWLPRIASGETLAALALTEPNIGSDLEHVETQLLDAGDEFILNGSKKYITLGQIA
DLFLVLANCQGQPTAVLVEKGTPGLIISPMSNFLGLRSNMLAEIFFDNCRIPKTNLLGSIGVGFTYVIQTALDEGRYTTA
YGCVGLGQACLDAALGYTQERKQFNRRLDEHQLIQKMITEMVVQVKAARELCFYAGELRQKKNPAYIAETLIAKYAASKM
VVFVSNHALQLFGAAGFDETYPVERYYRDAKVMEIIEGTSQMHEILISKLCINK

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=363, Percent_Identity=34.9862258953168, Blast_Score=216, Evalue=3e-56,
Organism=Homo sapiens, GI4501859, Length=360, Percent_Identity=32.7777777777778, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI226958412, Length=378, Percent_Identity=31.2169312169312, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI7656849, Length=372, Percent_Identity=29.0322580645161, Blast_Score=174, Evalue=8e-44,
Organism=Homo sapiens, GI4557231, Length=381, Percent_Identity=30.9711286089239, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI187960098, Length=381, Percent_Identity=30.9711286089239, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI21361497, Length=377, Percent_Identity=30.5039787798408, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI226958414, Length=346, Percent_Identity=31.7919075144509, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI4557235, Length=390, Percent_Identity=27.4358974358974, Blast_Score=162, Evalue=5e-40,
Organism=Homo sapiens, GI76496475, Length=390, Percent_Identity=27.4358974358974, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI4501857, Length=374, Percent_Identity=27.807486631016, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI4503943, Length=361, Percent_Identity=27.1468144044321, Blast_Score=145, Evalue=5e-35,
Organism=Homo sapiens, GI7669494, Length=349, Percent_Identity=27.2206303724928, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI211971008, Length=289, Percent_Identity=27.681660899654, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI48976061, Length=289, Percent_Identity=27.681660899654, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI38505218, Length=284, Percent_Identity=27.4647887323944, Blast_Score=104, Evalue=2e-22,
Organism=Escherichia coli, GI87081958, Length=365, Percent_Identity=24.6575342465753, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1786223, Length=350, Percent_Identity=23.1428571428571, Blast_Score=111, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17534899, Length=363, Percent_Identity=33.3333333333333, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17508101, Length=362, Percent_Identity=31.2154696132597, Blast_Score=195, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI17569725, Length=371, Percent_Identity=32.8840970350404, Blast_Score=193, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17506239, Length=365, Percent_Identity=30.4109589041096, Blast_Score=191, Evalue=5e-49,
Organism=Caenorhabditis elegans, GI17570075, Length=363, Percent_Identity=32.7823691460055, Blast_Score=189, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17538396, Length=376, Percent_Identity=31.6489361702128, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17533517, Length=366, Percent_Identity=29.2349726775956, Blast_Score=174, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI71985184, Length=353, Percent_Identity=29.1784702549575, Blast_Score=161, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI71990804, Length=280, Percent_Identity=31.0714285714286, Blast_Score=146, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17505929, Length=368, Percent_Identity=27.7173913043478, Blast_Score=142, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI71985192, Length=299, Percent_Identity=29.0969899665552, Blast_Score=134, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI17551932, Length=376, Percent_Identity=26.8617021276596, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI71982178, Length=258, Percent_Identity=29.8449612403101, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI32563615, Length=242, Percent_Identity=30.1652892561983, Blast_Score=124, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17534353, Length=380, Percent_Identity=23.9473684210526, Blast_Score=117, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17531909, Length=238, Percent_Identity=28.1512605042017, Blast_Score=104, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17562446, Length=292, Percent_Identity=26.027397260274, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17531913, Length=181, Percent_Identity=23.7569060773481, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17540912, Length=358, Percent_Identity=23.1843575418994, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356377, Length=364, Percent_Identity=33.7912087912088, Blast_Score=211, Evalue=6e-55,
Organism=Drosophila melanogaster, GI24660351, Length=372, Percent_Identity=33.3333333333333, Blast_Score=204, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24666513, Length=359, Percent_Identity=32.8690807799443, Blast_Score=195, Evalue=4e-50,
Organism=Drosophila melanogaster, GI24646207, Length=369, Percent_Identity=29.810298102981, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI21355753, Length=376, Percent_Identity=32.1808510638298, Blast_Score=171, Evalue=8e-43,
Organism=Drosophila melanogaster, GI19920834, Length=371, Percent_Identity=27.2237196765499, Blast_Score=149, Evalue=4e-36,
Organism=Drosophila melanogaster, GI281363737, Length=364, Percent_Identity=27.1978021978022, Blast_Score=146, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 41971; Mature: 41840

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNYQPRQVKKQQFFNQFIENCLHPHAKKFDKEQNIPRDFFYTLAQNGFLGACIPKQFGG
CCCCCHHHHHHHHHHHHHHHHHHCHHHHHCCHHCCCCHHHHHHHHCCCCEEEECCHHCCC
QQWDELTIGIMYESFAKELCSLANILTVLGMVSKSLLQFGSKAQKQIWLPRIASGETLAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEEE
LALTEPNIGSDLEHVETQLLDAGDEFILNGSKKYITLGQIADLFLVLANCQGQPTAVLVE
EEECCCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEE
KGTPGLIISPMSNFLGLRSNMLAEIFFDNCRIPKTNLLGSIGVGFTYVIQTALDEGRYTT
CCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCEEE
AYGCVGLGQACLDAALGYTQERKQFNRRLDEHQLIQKMITEMVVQVKAARELCFYAGELR
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKKNPAYIAETLIAKYAASKMVVFVSNHALQLFGAAGFDETYPVERYYRDAKVMEIIEGT
HCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEHCCCCCCCCCCHHHHHHHHHHHHHHHHH
SQMHEILISKLCINK
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
PNYQPRQVKKQQFFNQFIENCLHPHAKKFDKEQNIPRDFFYTLAQNGFLGACIPKQFGG
CCCCHHHHHHHHHHHHHHHHHHCHHHHHCCHHCCCCHHHHHHHHCCCCEEEECCHHCCC
QQWDELTIGIMYESFAKELCSLANILTVLGMVSKSLLQFGSKAQKQIWLPRIASGETLAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEEE
LALTEPNIGSDLEHVETQLLDAGDEFILNGSKKYITLGQIADLFLVLANCQGQPTAVLVE
EEECCCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEE
KGTPGLIISPMSNFLGLRSNMLAEIFFDNCRIPKTNLLGSIGVGFTYVIQTALDEGRYTT
CCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCEEE
AYGCVGLGQACLDAALGYTQERKQFNRRLDEHQLIQKMITEMVVQVKAARELCFYAGELR
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKKNPAYIAETLIAKYAASKMVVFVSNHALQLFGAAGFDETYPVERYYRDAKVMEIIEGT
HCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEHCCCCCCCCCCHHHHHHHHHHHHHHHHH
SQMHEILISKLCINK
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]