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The map label for this gene is vacJ

Identifier: 52842072

GI number: 52842072

Start: 2067708

End: 2068490

Strand: Direct

Name: vacJ

Synonym: lpg1845

Alternate gene names: 52842072

Gene position: 2067708-2068490 (Clockwise)

Preceding gene: 52842071

Following gene: 52842075

Centisome position: 60.86

GC content: 40.36

Gene sequence:

>783_bases
ATGCGACTAATCTTAATGTTTGCTAGCATCATGGGATCCGTTATTTTAGCGAGCTGTGCAAGTAAAGGATCAAACCCGAT
CGATCCATTCGAACCCTTTAATCGTAAAGTGCACAATTTTAATATGGCATTTGATGCTACCGTATTAAGACCACCAGCAA
AATTATATCAGGCTGTCGTACCAAAATTGGTAAGAAAAGGTGTGAATAATGCATTCAATAATCTGGATTTGTTCCCTACA
ATAGCCAGCGATATACTGCAAGCTGAAGGAAAATGGGTAATCAAAGACAGTTGGCGACTCTTCATTAACTCCACTATTGG
GGTTGCTGGTCTGTTTGATGTAGCAGAAAAATTTGGTTTGCCACCGCATTACAATGATCTGGGCCTAACACTCGCCAAAT
GGGGCGATAAAAAATCGCCTTACCTTGTAATACCCTTTTTAGGCCCCAGTACTCTTCGTGATGGAGCCGGCTGGCTGTTC
CAGTTTGCACTCTGGAGTCCTTATGTATATATTGATGATGCTGGTCTGGTTTATGGTTTAATTGGATTACGCTATATTGA
TTTACGAACACAATTTTTCGACTCTGAGCCTTTACTGAATGAAGCATTAGACAAATACACATTCATCAGAGACGCTTACC
TGCAACATAGAAATTATCTTATTGCAGGGACTGAGCAAGATACAGGCACGTCCTTCGTTGAGGATAAGAAAGCTAACAAA
ACTGCAATGCAAGAATCAACCGCTTCAAATAACCAACTAGGTTCTGACTATGTTGATGAATAA

Upstream 100 bases:

>100_bases
GCAGCAATTTAAAAGGCCTATTCTTTACATCAAAGCATTTGTTTGCAAGAACCAAAAACTGGTGTAACATCATTTTAAGT
ATTTAATAAATAGAATAATT

Downstream 100 bases:

>100_bases
AATGATTAATTGAGACTTGCCAGGTCATGATAAGGGTTGGTATTGAGCCAAATGCAAAACCAACCCTCTTTAAGCTCTGA
ACTTCAAAATCAAAATAATG

Product: lipoprotein VacJ-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MRLILMFASIMGSVILASCASKGSNPIDPFEPFNRKVHNFNMAFDATVLRPPAKLYQAVVPKLVRKGVNNAFNNLDLFPT
IASDILQAEGKWVIKDSWRLFINSTIGVAGLFDVAEKFGLPPHYNDLGLTLAKWGDKKSPYLVIPFLGPSTLRDGAGWLF
QFALWSPYVYIDDAGLVYGLIGLRYIDLRTQFFDSEPLLNEALDKYTFIRDAYLQHRNYLIAGTEQDTGTSFVEDKKANK
TAMQESTASNNQLGSDYVDE

Sequences:

>Translated_260_residues
MRLILMFASIMGSVILASCASKGSNPIDPFEPFNRKVHNFNMAFDATVLRPPAKLYQAVVPKLVRKGVNNAFNNLDLFPT
IASDILQAEGKWVIKDSWRLFINSTIGVAGLFDVAEKFGLPPHYNDLGLTLAKWGDKKSPYLVIPFLGPSTLRDGAGWLF
QFALWSPYVYIDDAGLVYGLIGLRYIDLRTQFFDSEPLLNEALDKYTFIRDAYLQHRNYLIAGTEQDTGTSFVEDKKANK
TAMQESTASNNQLGSDYVDE
>Mature_260_residues
MRLILMFASIMGSVILASCASKGSNPIDPFEPFNRKVHNFNMAFDATVLRPPAKLYQAVVPKLVRKGVNNAFNNLDLFPT
IASDILQAEGKWVIKDSWRLFINSTIGVAGLFDVAEKFGLPPHYNDLGLTLAKWGDKKSPYLVIPFLGPSTLRDGAGWLF
QFALWSPYVYIDDAGLVYGLIGLRYIDLRTQFFDSEPLLNEALDKYTFIRDAYLQHRNYLIAGTEQDTGTSFVEDKKANK
TAMQESTASNNQLGSDYVDE

Specific function: Unknown

COG id: COG2853

COG function: function code M; Surface lipoprotein

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaA family [H]

Homologues:

Organism=Escherichia coli, GI1788688, Length=227, Percent_Identity=31.2775330396476, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007428 [H]

Pfam domain/function: PF04333 VacJ [H]

EC number: NA

Molecular weight: Translated: 29123; Mature: 29123

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLILMFASIMGSVILASCASKGSNPIDPFEPFNRKVHNFNMAFDATVLRPPAKLYQAVV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEECCEEECCHHHHHHHHH
PKLVRKGVNNAFNNLDLFPTIASDILQAEGKWVIKDSWRLFINSTIGVAGLFDVAEKFGL
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHHHCCC
PPHYNDLGLTLAKWGDKKSPYLVIPFLGPSTLRDGAGWLFQFALWSPYVYIDDAGLVYGL
CCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHCCEEEEECCHHHHHH
IGLRYIDLRTQFFDSEPLLNEALDKYTFIRDAYLQHRNYLIAGTEQDTGTSFVEDKKANK
HHHHHEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
TAMQESTASNNQLGSDYVDE
HHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLILMFASIMGSVILASCASKGSNPIDPFEPFNRKVHNFNMAFDATVLRPPAKLYQAVV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEECCEEECCHHHHHHHHH
PKLVRKGVNNAFNNLDLFPTIASDILQAEGKWVIKDSWRLFINSTIGVAGLFDVAEKFGL
HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHHHCCC
PPHYNDLGLTLAKWGDKKSPYLVIPFLGPSTLRDGAGWLFQFALWSPYVYIDDAGLVYGL
CCCCCCCCCCHHHCCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHCCEEEEECCHHHHHH
IGLRYIDLRTQFFDSEPLLNEALDKYTFIRDAYLQHRNYLIAGTEQDTGTSFVEDKKANK
HHHHHEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
TAMQESTASNNQLGSDYVDE
HHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA