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The map label for this gene is yxjO [H]

Identifier: 52842023

GI number: 52842023

Start: 2002200

End: 2003207

Strand: Direct

Name: yxjO [H]

Synonym: lpg1796

Alternate gene names: 52842023

Gene position: 2002200-2003207 (Clockwise)

Preceding gene: 52842022

Following gene: 52842024

Centisome position: 58.93

GC content: 34.13

Gene sequence:

>1008_bases
TTGCTTTTATGCGTTATAACGCCCTATTATAGGCTTTTGTATAATGATAAAAACTATCCTAGTATTAATTTAAGTAATAT
TATGATTGGTTTTAAAATAATGAATATTGCCGATTTGCAATCTTTTCTTGCAGTTGTAGAACTCCACTCTATCTCTTTAG
CTGCCAAAAAATTGCATATTACTCAGCCTGCTTTAAGTAAAAGAATTAGAAAACTTGAGTCGGAGTGGAATACCCAACTT
TTTATTTCTTCAGGATTAAGGACTGAGCTAACTGATAAAGGAAAACAATTATTGCCTTATGTTCGGCAGATGGTTTATCT
GAGCCATGAGTTAATTAGCAGTACTGGTACAGATAAAAAAAAACCTCAGTTACTGCTAAATATTGGTACCACAGTATATA
TTGCTCAAACTATTATCCCCCCCCTTATAATCCATATGAACGCACTGGACTTGAACTACTTCATTAATACGAAACTGATT
GCTGACAAAGATGTAGCTCACGGTTTAAGCGAAGGTGCTTATGATCTGATTATCTCTCCGTTCATGAGTAATTCTGCTGA
AATTAAGTCTGTACCTTTGTGGCGAGAAAGGCTCATCCCAATTGTCGGGTTATCACATCCTCTAGCAAAAATTAAAGAAA
AACTATCCTTTGCTGAATTAGCAGAATTCGATGCGGTGCTTATGGAAAAAAACTTTATAATACGCCGAATTATTGATAAA
GAAGCTGAAAAACAAAAGTTGACTCTCAAAATAAGAGCTGAAGCCAATATTATTTATAACAACATAGCTCTTGTCGAACA
AGGTATGGCTTGGAGTATGATTAATGAACGCTTATTGAATCCTAATTTAAAACCTCTCGAACTATCTGATTATGCCCTCA
GCATTGATTTTTATTGTCATTTTCTTCAGAAACGTACAGATGAACGATTGATTCGTATTTTTATTGATAATCTGGTCAAT
TGGGTTAACACGTCAAGTGAATTAAGCTCTTTTTCCCTTGTTAATTAG

Upstream 100 bases:

>100_bases
TATCCTTCTTTCTGGAAAGTGGTCATGGCAATTATTACAAAACTCCCTTTTTTCATTTATAAAAGAATGGGAAAAATATA
AGTATCATTATCGCAATGAT

Downstream 100 bases:

>100_bases
ATAAACCCTTTATTGCCAGTTAAAAATGGGGGGATTACCGTTTAGAAAAGCATCAGGACGCTCTTTTAGGTATAATTTTA
ATGCATCAGCATCTATTTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MLLCVITPYYRLLYNDKNYPSINLSNIMIGFKIMNIADLQSFLAVVELHSISLAAKKLHITQPALSKRIRKLESEWNTQL
FISSGLRTELTDKGKQLLPYVRQMVYLSHELISSTGTDKKKPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLI
ADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPLWRERLIPIVGLSHPLAKIKEKLSFAELAEFDAVLMEKNFIIRRIIDK
EAEKQKLTLKIRAEANIIYNNIALVEQGMAWSMINERLLNPNLKPLELSDYALSIDFYCHFLQKRTDERLIRIFIDNLVN
WVNTSSELSSFSLVN

Sequences:

>Translated_335_residues
MLLCVITPYYRLLYNDKNYPSINLSNIMIGFKIMNIADLQSFLAVVELHSISLAAKKLHITQPALSKRIRKLESEWNTQL
FISSGLRTELTDKGKQLLPYVRQMVYLSHELISSTGTDKKKPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLI
ADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPLWRERLIPIVGLSHPLAKIKEKLSFAELAEFDAVLMEKNFIIRRIIDK
EAEKQKLTLKIRAEANIIYNNIALVEQGMAWSMINERLLNPNLKPLELSDYALSIDFYCHFLQKRTDERLIRIFIDNLVN
WVNTSSELSSFSLVN
>Mature_335_residues
MLLCVITPYYRLLYNDKNYPSINLSNIMIGFKIMNIADLQSFLAVVELHSISLAAKKLHITQPALSKRIRKLESEWNTQL
FISSGLRTELTDKGKQLLPYVRQMVYLSHELISSTGTDKKKPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLI
ADKDVAHGLSEGAYDLIISPFMSNSAEIKSVPLWRERLIPIVGLSHPLAKIKEKLSFAELAEFDAVLMEKNFIIRRIIDK
EAEKQKLTLKIRAEANIIYNNIALVEQGMAWSMINERLLNPNLKPLELSDYALSIDFYCHFLQKRTDERLIRIFIDNLVN
WVNTSSELSSFSLVN

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=233, Percent_Identity=28.755364806867, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693105, Length=242, Percent_Identity=25.6198347107438, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787806, Length=166, Percent_Identity=28.9156626506024, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=211, Percent_Identity=27.0142180094787, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38351; Mature: 38351

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLCVITPYYRLLYNDKNYPSINLSNIMIGFKIMNIADLQSFLAVVELHSISLAAKKLHI
CEEEEECHHHHHHCCCCCCCCEEHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEC
TQPALSKRIRKLESEWNTQLFISSGLRTELTDKGKQLLPYVRQMVYLSHELISSTGTDKK
CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLIADKDVAHGLSEGAYDLIISP
CCEEEEECCCHHHHHHHHHHHHHEEEEEEEEEEEEEEEEEECCHHHHCCCCCCHHHEEEH
FMSNSAEIKSVPLWRERLIPIVGLSHPLAKIKEKLSFAELAEFDAVLMEKNFIIRRIIDK
HHCCCCCCCCCCCHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EAEKQKLTLKIRAEANIIYNNIALVEQGMAWSMINERLLNPNLKPLELSDYALSIDFYCH
CCCCCEEEEEEEECCEEEEECHHHHHCCCHHHHHHHHHCCCCCCCEEECCEEEEHHHHHH
FLQKRTDERLIRIFIDNLVNWVNTSSELSSFSLVN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
>Mature Secondary Structure
MLLCVITPYYRLLYNDKNYPSINLSNIMIGFKIMNIADLQSFLAVVELHSISLAAKKLHI
CEEEEECHHHHHHCCCCCCCCEEHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEEC
TQPALSKRIRKLESEWNTQLFISSGLRTELTDKGKQLLPYVRQMVYLSHELISSTGTDKK
CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KPQLLLNIGTTVYIAQTIIPPLIIHMNALDLNYFINTKLIADKDVAHGLSEGAYDLIISP
CCEEEEECCCHHHHHHHHHHHHHEEEEEEEEEEEEEEEEEECCHHHHCCCCCCHHHEEEH
FMSNSAEIKSVPLWRERLIPIVGLSHPLAKIKEKLSFAELAEFDAVLMEKNFIIRRIIDK
HHCCCCCCCCCCCHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EAEKQKLTLKIRAEANIIYNNIALVEQGMAWSMINERLLNPNLKPLELSDYALSIDFYCH
CCCCCEEEEEEEECCEEEEECHHHHHCCCHHHHHHHHHCCCCCCCEEECCEEEEHHHHHH
FLQKRTDERLIRIFIDNLVNWVNTSSELSSFSLVN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]