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The map label for this gene is 52842022

Identifier: 52842022

GI number: 52842022

Start: 2001413

End: 2002180

Strand: Direct

Name: 52842022

Synonym: lpg1795

Alternate gene names: NA

Gene position: 2001413-2002180 (Clockwise)

Preceding gene: 52842021

Following gene: 52842023

Centisome position: 58.9

GC content: 37.11

Gene sequence:

>768_bases
ATGCCCCATGCGTTCAGATCTTGCGACACGTTTAGGAATCATAAAATGATGCAGAGGAAATGGGTTGTTTTAGGAGCTAC
TTCAGTTATTGCCGAACAATTCGCACATTTTGCTGCGCAAGCCGGTAACCATTTATGTTTAGTTGCACGCAACTCCGAGC
AATTAGCCTTAATCTCAAAAGATATTCAATTGCGATATAAAATCCCTTGTAACGCGATAACTATCAATTTATCCGAGCCT
AACGAGCAATTGCTTACCATTTTAGAAACCAGAGAAAGAGAATTGGATTTATTTATTGCGCATTGTGATTTTACCGATAA
TAACCATTTAAATCCGCAATCGATTAAACATTTAATTGATACCAATATCTCATCTACAGCGATCCTGATTAATACCTATT
TACAATCCCAACAAGAAAAACATCGCATCGTTTATTTAAGCTCTGTTGCTTCCTGCCGCGGCCGTGCCAAAAATAGTCTT
TATGGTGCCAGTAAAGCAGCAATTGAAATATTTCTCGAAGGCCTGCAGCAAAAAGCAACTCCACATCAACATATCTTAAT
CGCTCGCCTTGGATACATTGATACAAAACAAACGTATGGACTACCCGGAGTTTTTTACGCAGCTCAACCTCATGACTGTG
CAAAGGCATGTTGGGAAAAAATAAATCATAATAAAAGATTATTTTACTATCCTTCTTTCTGGAAAGTGGTCATGGCAATT
ATTACAAAACTCCCTTTTTTCATTTATAAAAGAATGGGAAAAATATAA

Upstream 100 bases:

>100_bases
GGTGTGTTTATTTGGCTAAGGATTTATTACTAAATCCAGAACAATATTTTACAATGTACGAAAATCAATCGAAATTTGCT
CAAATACTTACAAAATATCG

Downstream 100 bases:

>100_bases
GTATCATTATCGCAATGATTTGCTTTTATGCGTTATAACGCCCTATTATAGGCTTTTGTATAATGATAAAAACTATCCTA
GTATTAATTTAAGTAATATT

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: Short Chain Dehydrogenase; Short-Chain Dehydrogenase; Oxidoreductase Short-Chain Dehydrogenase/Reductase Family; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; Oxidoreductase; 3-Oxoacyl-[Acyl-Carrier Protein] Reductase Paralog; Oxidoreductase Short Chain Dehydrogenase/Reductase Family; 3-Oxoacyl-(Acyl-Carrier Protein) Reductase Paralog

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MPHAFRSCDTFRNHKMMQRKWVVLGATSVIAEQFAHFAAQAGNHLCLVARNSEQLALISKDIQLRYKIPCNAITINLSEP
NEQLLTILETRERELDLFIAHCDFTDNNHLNPQSIKHLIDTNISSTAILINTYLQSQQEKHRIVYLSSVASCRGRAKNSL
YGASKAAIEIFLEGLQQKATPHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWKVVMAI
ITKLPFFIYKRMGKI

Sequences:

>Translated_255_residues
MPHAFRSCDTFRNHKMMQRKWVVLGATSVIAEQFAHFAAQAGNHLCLVARNSEQLALISKDIQLRYKIPCNAITINLSEP
NEQLLTILETRERELDLFIAHCDFTDNNHLNPQSIKHLIDTNISSTAILINTYLQSQQEKHRIVYLSSVASCRGRAKNSL
YGASKAAIEIFLEGLQQKATPHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWKVVMAI
ITKLPFFIYKRMGKI
>Mature_254_residues
PHAFRSCDTFRNHKMMQRKWVVLGATSVIAEQFAHFAAQAGNHLCLVARNSEQLALISKDIQLRYKIPCNAITINLSEPN
EQLLTILETRERELDLFIAHCDFTDNNHLNPQSIKHLIDTNISSTAILINTYLQSQQEKHRIVYLSSVASCRGRAKNSLY
GASKAAIEIFLEGLQQKATPHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWKVVMAII
TKLPFFIYKRMGKI

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI226371731, Length=173, Percent_Identity=27.1676300578035, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29219; Mature: 29088

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHAFRSCDTFRNHKMMQRKWVVLGATSVIAEQFAHFAAQAGNHLCLVARNSEQLALISK
CCCCHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEC
DIQLRYKIPCNAITINLSEPNEQLLTILETRERELDLFIAHCDFTDNNHLNPQSIKHLID
CEEEEEECCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHH
TNISSTAILINTYLQSQQEKHRIVYLSSVASCRGRAKNSLYGASKAAIEIFLEGLQQKAT
CCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWKVVMAI
CCCEEEEEHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
ITKLPFFIYKRMGKI
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
PHAFRSCDTFRNHKMMQRKWVVLGATSVIAEQFAHFAAQAGNHLCLVARNSEQLALISK
CCCHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEC
DIQLRYKIPCNAITINLSEPNEQLLTILETRERELDLFIAHCDFTDNNHLNPQSIKHLID
CEEEEEECCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHH
TNISSTAILINTYLQSQQEKHRIVYLSSVASCRGRAKNSLYGASKAAIEIFLEGLQQKAT
CCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
PHQHILIARLGYIDTKQTYGLPGVFYAAQPHDCAKACWEKINHNKRLFYYPSFWKVVMAI
CCCEEEEEHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
ITKLPFFIYKRMGKI
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA