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The map label for this gene is ynhG [H]

Identifier: 52841825

GI number: 52841825

Start: 1761225

End: 1761959

Strand: Reverse

Name: ynhG [H]

Synonym: lpg1595

Alternate gene names: 52841825

Gene position: 1761959-1761225 (Counterclockwise)

Preceding gene: 52841826

Following gene: 52841822

Centisome position: 51.86

GC content: 40.41

Gene sequence:

>735_bases
ATGGAGCAAAAATCAAAATCTATAATAAGAGTTTGGTATTTAATACTTTTACTCAGTCAATATTCTTTTGCGAATGTTTA
TGTATTGCCTGAAGCCGGAAATACCGTCGGTGAAATTCAGGTCGCATTTTCAGAGTATGGAGAAACTATAGATGAGGTTG
GCCGGCGTTTTAATGTCGGTTATTATGAAATGGTACGTGCTAACCCGGGAGTGAATGCCAGATATCCGCTAGCTGCTAAC
ACAAAATTAATTATTCCATCTCGTTTTATCCTCCCCAACGTTCCCAGAAAAGGTGTAGTGATTAATTTAGCAGAATATCG
ATTATATTATTTTCCTCCAGATGACAATGTTGTCATGACTTATCCTGTTGGGATTGGTAAAAAAGGATGGGAGACTCCTT
TGGGATTAAGCAGAATCATCTCCAAGGAAATTAATCCTACCTGGCGACCTACAGTAAAATTACAAAAGGCAGCTGAAAGC
ATTGGTGCTCCTATTCCCAGTGAGTTCCCCCCTGGTCCTCACAATCCTTTAGGTCAACATGTATTGCGTTTAGGGTGGCC
AGCTATCTTAATACATGGTTCTAATCGAGTTGATGGGATTGGGGCCAAAGTCAGTGCGGGGTGTATTCGTATGCTTCCTG
AGGATATTGAGCATCTATATAGTTTAGTGTCTGTAGGGACGCCAGTAAGAATTATAAATGCTCCTCTACAAGGGCAAGCT
GATTTTAAGCAATAA

Upstream 100 bases:

>100_bases
CTAAATACGGCGAACGTTTTAAGGTAGATACCAGCTTATAATTTCTCTGCAAGGTAAGACGTTATGGTTTTACCTTGCTT
TTTAGAGAGAAAAGCATCAT

Downstream 100 bases:

>100_bases
CTATTTTCAGGTATGGGTTTTCAGTCAGATTAATGCCTATAAATCCAAATAACGGGCCTCAACTTTAATTACAGTTAACA
GATAATAAGATAATCCAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLAAN
TKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPHNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQGQA
DFKQ

Sequences:

>Translated_244_residues
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLAAN
TKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPHNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQGQA
DFKQ
>Mature_244_residues
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVGYYEMVRANPGVNARYPLAAN
TKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAES
IGAPIPSEFPPGPHNPLGQHVLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQGQA
DFKQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=223, Percent_Identity=41.7040358744395, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1787356, Length=223, Percent_Identity=41.2556053811659, Blast_Score=169, Evalue=1e-43,
Organism=Escherichia coli, GI1787040, Length=245, Percent_Identity=36.734693877551, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1788299, Length=233, Percent_Identity=37.7682403433476, Blast_Score=153, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 27078; Mature: 27078

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVG
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHEEEHHHHHCHHHHHHHHHCCCC
YYEMVRANPGVNARYPLAANTKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMT
CEEEEECCCCCCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE
YPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAESIGAPIPSEFPPGPHNPLGQH
EECCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
VLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQGQA
HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEECCCCCCC
DFKQ
CCCC
>Mature Secondary Structure
MEQKSKSIIRVWYLILLLSQYSFANVYVLPEAGNTVGEIQVAFSEYGETIDEVGRRFNVG
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHEEEHHHHHCHHHHHHHHHCCCC
YYEMVRANPGVNARYPLAANTKLIIPSRFILPNVPRKGVVINLAEYRLYYFPPDDNVVMT
CEEEEECCCCCCCCCCCCCCCEEEECCHHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE
YPVGIGKKGWETPLGLSRIISKEINPTWRPTVKLQKAAESIGAPIPSEFPPGPHNPLGQH
EECCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
VLRLGWPAILIHGSNRVDGIGAKVSAGCIRMLPEDIEHLYSLVSVGTPVRIINAPLQGQA
HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCEEEEECCCCCCC
DFKQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]