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The map label for this gene is 52841776

Identifier: 52841776

GI number: 52841776

Start: 1710317

End: 1711099

Strand: Reverse

Name: 52841776

Synonym: lpg1546

Alternate gene names: NA

Gene position: 1711099-1710317 (Counterclockwise)

Preceding gene: 52841777

Following gene: 52841775

Centisome position: 50.36

GC content: 35.89

Gene sequence:

>783_bases
GTGCTAAAAAGCATAAGGTACTTATTAACTATAATAATTTGTTTATTTGTTGGAGCTTGTCAGCATACACAAGATAACGA
AGAGCCTAATAGCATTAGAAAAGTAAACCTTAGCAAAGCGGCTTCTTTTAATGTGCAATTAGGGTTGGGATATTTGAAGC
AAGGCGACAGGCCTAGAGCAAAAAAGAAGCTGTTAACCGCCTTGGAACAACAACCCGATTCAGCGGATGTTAATGCAGCA
TTAGCCTATTATTTTGAACAAACCAAAGAATTGGAACAAGCGAAAAAATTCTATCATAAAGCAATAACCCTATCGCAAAA
TGGTGGTGCACAATTGAATAATTACGGCGCTTTTCTGTGTCGACAGGGGGATTATAAAAATGCTGAAACTTACTTCCTGA
AGGCCGTTAAAGATCAAAACTATGTGCATACCTCAGGCGCTTATGAAAATGCTGGATTATGTGCTATGGCTATACCTGAT
CATGATAAAGCCATTTTATATTTTACGAAGGCCTTAAATCAGGATCCATCCAGAAAAGAATCACTATATGAATTAGTAAA
ATTACAAAGTAAAATAGGACATGATAAAGAAGCCCTCGAACTGCTTCAAAAACATGCTGATTTAGTATTAAATGATAAGG
TAATGCTTGCATTAGCGAAAGACATAGCAAATAGAACAGGCCAATATACTCTTGCAGCAGAATATGAAAATAGCTTCAAT
AAACTGGAGCAAACTAATAATATTAGTGGAGTAAACGATGAATACAATAGCAGCAATGGATGA

Upstream 100 bases:

>100_bases
GTTTTCACCTGCAGACTCACATTAAATAGTGACAAATCATTTTTAATTTGGACTTAAGTGGTTATAATGCGAAATCATTT
CTAACGTAAAGTGATTAATC

Downstream 100 bases:

>100_bases
GACAAGAAATAATGAATTTACCAATCCCGGCTACGAGCTGGCGGCTCTTCGCCAGCAAAAAGGGTATTCAATCGAGTATG
TTGCGAGCAAACTTCATCTA

Product: fimbrial biogenesis and twitching motility protein PilF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLKSIRYLLTIIICLFVGACQHTQDNEEPNSIRKVNLSKAASFNVQLGLGYLKQGDRPRAKKKLLTALEQQPDSADVNAA
LAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLCRQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPD
HDKAILYFTKALNQDPSRKESLYELVKLQSKIGHDKEALELLQKHADLVLNDKVMLALAKDIANRTGQYTLAAEYENSFN
KLEQTNNISGVNDEYNSSNG

Sequences:

>Translated_260_residues
MLKSIRYLLTIIICLFVGACQHTQDNEEPNSIRKVNLSKAASFNVQLGLGYLKQGDRPRAKKKLLTALEQQPDSADVNAA
LAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLCRQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPD
HDKAILYFTKALNQDPSRKESLYELVKLQSKIGHDKEALELLQKHADLVLNDKVMLALAKDIANRTGQYTLAAEYENSFN
KLEQTNNISGVNDEYNSSNG
>Mature_260_residues
MLKSIRYLLTIIICLFVGACQHTQDNEEPNSIRKVNLSKAASFNVQLGLGYLKQGDRPRAKKKLLTALEQQPDSADVNAA
LAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLCRQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPD
HDKAILYFTKALNQDPSRKESLYELVKLQSKIGHDKEALELLQKHADLVLNDKVMLALAKDIANRTGQYTLAAEYENSFN
KLEQTNNISGVNDEYNSSNG

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013360
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29156; Mature: 29156

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSIRYLLTIIICLFVGACQHTQDNEEPNSIRKVNLSKAASFNVQLGLGYLKQGDRPRA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECHHHHCEEEEEECCHHHCCCCCCHH
KKKLLTALEQQPDSADVNAALAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEE
RQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPDHDKAILYFTKALNQDPSRKE
ECCCCCCCHHHHHEECCCCCEEECCCCCCCCCEEEEECCCCCCEEEEEEHHHCCCCCHHH
SLYELVKLQSKIGHDKEALELLQKHADLVLNDKVMLALAKDIANRTGQYTLAAEYENSFN
HHHHHHHHHHHHCCCHHHHHHHHHHHCEEECCHHHHHHHHHHHHCCCCEEEEEHHHHHHH
KLEQTNNISGVNDEYNSSNG
HHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKSIRYLLTIIICLFVGACQHTQDNEEPNSIRKVNLSKAASFNVQLGLGYLKQGDRPRA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECHHHHCEEEEEECCHHHCCCCCCHH
KKKLLTALEQQPDSADVNAALAYYFEQTKELEQAKKFYHKAITLSQNGGAQLNNYGAFLC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEE
RQGDYKNAETYFLKAVKDQNYVHTSGAYENAGLCAMAIPDHDKAILYFTKALNQDPSRKE
ECCCCCCCHHHHHEECCCCCEEECCCCCCCCCEEEEECCCCCCEEEEEEHHHCCCCCHHH
SLYELVKLQSKIGHDKEALELLQKHADLVLNDKVMLALAKDIANRTGQYTLAAEYENSFN
HHHHHHHHHHHHCCCHHHHHHHHHHHCEEECCHHHHHHHHHHHHCCCCEEEEEHHHHHHH
KLEQTNNISGVNDEYNSSNG
HHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]