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The map label for this gene is yacF [C]

Identifier: 52841696

GI number: 52841696

Start: 1618972

End: 1619718

Strand: Reverse

Name: yacF [C]

Synonym: lpg1466

Alternate gene names: 52841696

Gene position: 1619718-1618972 (Counterclockwise)

Preceding gene: 52841697

Following gene: 52841688

Centisome position: 47.67

GC content: 32.93

Gene sequence:

>747_bases
ATGCATGACCATATGATAACGTTTCAACTAGCAACTCATTTTTTATCAAGAATTGCCTTGCGCCTGGAGTACCTCTTTAA
AACCATCAATGAAGCTTGTAATGAGTCTCATGAGGTTATTCATCGTTTTGCATTAAAGAATATAATTGAGATTGTTGAAA
TAGTTGAAAAGCCGGAATTAAAAAGCAGATTTATCAAAGAGTTAATTAGAATTGAGCATGTACTTAAAAAAGCCAATCTA
TTGAATCATAGTGAGTTATTTGATGATCTGGAAACACAAATTCATGTGTTAAATCATGTACCAGGTCGATTTAGTAACAA
AATCCATGATGATGAATTTTTAAAAACTTTAAGACAAATACACCACCCCAATACTAAAGAATGCGAATTTAATTCCCCTC
ATTTGGTATTGTGGTTTGATTCAGATCCCCTAATGAGGCAAAAAACAATTAGTCAATGGGTGTCATGCCTGAAGGATCTG
GAAGATACTGTAAAAATTTATTTGTCATTGTTACGAGGTGTTACTCAGTATACTCCCATTAGAGCAAATAATGGATTCTA
TCAGCATAGTCTTTCACCTAAATCACTTAACCATCTGATCTTGTTAAGAATAGATAAGAAATTGAAAATGATACCCAAAA
TCCAGTTAGGGCATCATAGTTTAACTATCAGGCTTTATGAGCTTGTCACTGGTCAAGAAATCAGAGATAAAACAATAGAG
ATGGAAATTGCATTTTGCCAAATATAG

Upstream 100 bases:

>100_bases
TGTTTTTAAATAAACCCAGGAGCCCATTTTTACCCAATGTGCATCTATAAAAATTTAAATTGCCATTATTATAGGATAAA
GCTAAGGATGGCCTTAATCT

Downstream 100 bases:

>100_bases
ATGCCCTGTGCGCTATGCTGGCTTTGCGTTAAAGTGAGTCTGCATTAATTAAATTGTATAGTAATTCCTCCGCCATAATA
ACGCTCAACACCATTCAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIVEIVEKPELKSRFIKELIRIEHVLKKANL
LNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQIHHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLKDL
EDTVKIYLSLLRGVTQYTPIRANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
MEIAFCQI

Sequences:

>Translated_248_residues
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIVEIVEKPELKSRFIKELIRIEHVLKKANL
LNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQIHHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLKDL
EDTVKIYLSLLRGVTQYTPIRANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
MEIAFCQI
>Mature_248_residues
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIVEIVEKPELKSRFIKELIRIEHVLKKANL
LNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQIHHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLKDL
EDTVKIYLSLLRGVTQYTPIRANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
MEIAFCQI

Specific function: Unknown

COG id: COG4582

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0289 family [H]

Homologues:

Organism=Escherichia coli, GI1786291, Length=239, Percent_Identity=25.9414225941423, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009777 [H]

Pfam domain/function: PF07072 DUF1342 [H]

EC number: NA

Molecular weight: Translated: 29311; Mature: 29311

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIVEIVEKPEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCH
KSRFIKELIRIEHVLKKANLLNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHH
HHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLKDLEDTVKIYLSLLRGVTQYTPI
HCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
RANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
ECCCCCEECCCCHHHHCCEEEEEECCHHHHCCCEEECCCHHHHHHHHHHCCCHHHHHHHE
MEIAFCQI
EEEEEECC
>Mature Secondary Structure
MHDHMITFQLATHFLSRIALRLEYLFKTINEACNESHEVIHRFALKNIIEIVEIVEKPEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCH
KSRFIKELIRIEHVLKKANLLNHSELFDDLETQIHVLNHVPGRFSNKIHDDEFLKTLRQI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHH
HHPNTKECEFNSPHLVLWFDSDPLMRQKTISQWVSCLKDLEDTVKIYLSLLRGVTQYTPI
HCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
RANNGFYQHSLSPKSLNHLILLRIDKKLKMIPKIQLGHHSLTIRLYELVTGQEIRDKTIE
ECCCCCEECCCCHHHHCCEEEEEECCHHHHCCCEEECCCHHHHHHHHHHCCCHHHHHHHE
MEIAFCQI
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782 [H]