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The map label for this gene is fliD

Identifier: 52841568

GI number: 52841568

Start: 1476083

End: 1477708

Strand: Reverse

Name: fliD

Synonym: lpg1338

Alternate gene names: 52841568

Gene position: 1477708-1476083 (Counterclockwise)

Preceding gene: 52841569

Following gene: 52841567

Centisome position: 43.49

GC content: 38.93

Gene sequence:

>1626_bases
ATGGAACTCTCTTCACCAGGCGTAGGGTCAGGACTTGATGTAAAAAACTTGGTCGATGCGATAGTCACGGCAGAAATAAC
TCCATCGCAAGTGCGTCATGATAAACAGTTAAACAGTGTCAATACAGAGTTGTCGGCGCTTGGTCAATTAAAAAGCTATT
TAACTAACTTGCAAACTTCCTTAGCCAAGCTCTCCAGTCTTAGCCAATTCTACACTATGAAATCAACCATTAGTGATCCG
AATTACTTTTCCGCTACTCTGGGGACTGGCGCGACTAAAAATACTTATCAAATTGAAATACAAAAACTGGCGCAACAACA
CAGTCTGGCAAGCTCTTACATGACTAATACTGGAAGCGGAACAATAACCATAGATTTTGGAACCTATAACAGTGATAAAA
CCACTTTTACACCGAATCCTTCCGCTACGTCAGTCAACATAACCATTACGCCTGGCAACGATAGCCTTGTTGCGGTACGA
GATGCCATTAATAATACTAATTCAGGAATAACAGCCAGCATAGTTCAAGATAGCCAGGGCTCCAGGCTAACTATCACTTC
GTCAAAAACCGGCGAAAATTATGCCATGAAAATTAGTGGTGGAGTTGCCTCATTGAATTATGATCCTACTATGGGAGTGA
ATTCATTAACTGAAACAGTAGCAGCACAAAACAGTACTGTTAAAATTAACGGATTAACTTTGGTTCAAAGTTCTAATCAA
TTGAATGAGGCAATAACTGGTGTCACCATTGATCTAAAGAAAGCAGAGATTGGGAAAATTGTCACCTTAACTGTTGATGA
TAATAAAGATCAGCTCACAGGCTTAATCAACGAGTTCATAAAACAATACAATGACACCATGACTTTTTTAACCAACTTAA
CTGGTTATAATAATGAAACCAAACAAGGAGGAGTATTTCAGGGCGACCCTCAATTTCGCAATTTAAAACTCAATTTAAAC
AAGTGGGCAACTACCCCTTTGGCTAACCAGGAAGGACCAATCCGCTCATTAGCCGATTTGGGAATCATCACCAATAAACA
AGGTTTACTGGAAATCAAACAAGACAAGTTTAAAACTGCACTCGATAATCACTATAAAGAAATAGGAGCATTGTTTGCAA
AAACAGCCAAGGCTAATGATACTGGCATAAACGTCAAATCCATTAATTCAACTGTCAAATCAGGTACCTATGATGTGGTG
TTGACTGAATTTACTCCTGGAGTCAGCATGTCTGGAACAATAGGAGGCTTATCTGCTATATCATCCGATGGCATTACATT
GACAGGAAGTGCTGATTTGAGTGGTCTGTCGATTAATGTATTTTCGGGGTCTGCCGGCTCCCGTGGACAAATAACTGTTA
CAGACGGTATTGCAGTCCAATTAAGTTCCTTGCTGGATGCTTACATTGAAATTAAAGGCGATTTGGAGCAGAGAAAAGAT
CAACTCAATAATCAAGTCAAGCAATTGAATAAAATACAAAACGAAATTGATATCAGGCGCAAATCAATTGAAACTCGCTA
TTTAAAACAATTCACTGCTCTGGACACTCTACTCAGCCAATTACAAAGCACTAGTGTTTTTCTATCCCAGCAATTAGCCA
ATTTACCCCAATTAAAATTGAAATAA

Upstream 100 bases:

>100_bases
ATGATATTATTAGTGGTTCTATAGACAAGCACGTTTAATAATTTGAAATATTTATTAAAAATTTGACTAGAACAATAACA
ACATAGAAAAGGGATACTCT

Downstream 100 bases:

>100_bases
TAGGAGGTAATGAGAATGAAAAACCTATATTCACAAATTTCCAGCCAATACAAAGCCATAGAGCTACAAACCCGCATAGA
AACAGCCTCCCCTCATGAAC

Product: flagellar hook associated protein 2 FliD

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MELSSPGVGSGLDVKNLVDAIVTAEITPSQVRHDKQLNSVNTELSALGQLKSYLTNLQTSLAKLSSLSQFYTMKSTISDP
NYFSATLGTGATKNTYQIEIQKLAQQHSLASSYMTNTGSGTITIDFGTYNSDKTTFTPNPSATSVNITITPGNDSLVAVR
DAINNTNSGITASIVQDSQGSRLTITSSKTGENYAMKISGGVASLNYDPTMGVNSLTETVAAQNSTVKINGLTLVQSSNQ
LNEAITGVTIDLKKAEIGKIVTLTVDDNKDQLTGLINEFIKQYNDTMTFLTNLTGYNNETKQGGVFQGDPQFRNLKLNLN
KWATTPLANQEGPIRSLADLGIITNKQGLLEIKQDKFKTALDNHYKEIGALFAKTAKANDTGINVKSINSTVKSGTYDVV
LTEFTPGVSMSGTIGGLSAISSDGITLTGSADLSGLSINVFSGSAGSRGQITVTDGIAVQLSSLLDAYIEIKGDLEQRKD
QLNNQVKQLNKIQNEIDIRRKSIETRYLKQFTALDTLLSQLQSTSVFLSQQLANLPQLKLK

Sequences:

>Translated_541_residues
MELSSPGVGSGLDVKNLVDAIVTAEITPSQVRHDKQLNSVNTELSALGQLKSYLTNLQTSLAKLSSLSQFYTMKSTISDP
NYFSATLGTGATKNTYQIEIQKLAQQHSLASSYMTNTGSGTITIDFGTYNSDKTTFTPNPSATSVNITITPGNDSLVAVR
DAINNTNSGITASIVQDSQGSRLTITSSKTGENYAMKISGGVASLNYDPTMGVNSLTETVAAQNSTVKINGLTLVQSSNQ
LNEAITGVTIDLKKAEIGKIVTLTVDDNKDQLTGLINEFIKQYNDTMTFLTNLTGYNNETKQGGVFQGDPQFRNLKLNLN
KWATTPLANQEGPIRSLADLGIITNKQGLLEIKQDKFKTALDNHYKEIGALFAKTAKANDTGINVKSINSTVKSGTYDVV
LTEFTPGVSMSGTIGGLSAISSDGITLTGSADLSGLSINVFSGSAGSRGQITVTDGIAVQLSSLLDAYIEIKGDLEQRKD
QLNNQVKQLNKIQNEIDIRRKSIETRYLKQFTALDTLLSQLQSTSVFLSQQLANLPQLKLK
>Mature_541_residues
MELSSPGVGSGLDVKNLVDAIVTAEITPSQVRHDKQLNSVNTELSALGQLKSYLTNLQTSLAKLSSLSQFYTMKSTISDP
NYFSATLGTGATKNTYQIEIQKLAQQHSLASSYMTNTGSGTITIDFGTYNSDKTTFTPNPSATSVNITITPGNDSLVAVR
DAINNTNSGITASIVQDSQGSRLTITSSKTGENYAMKISGGVASLNYDPTMGVNSLTETVAAQNSTVKINGLTLVQSSNQ
LNEAITGVTIDLKKAEIGKIVTLTVDDNKDQLTGLINEFIKQYNDTMTFLTNLTGYNNETKQGGVFQGDPQFRNLKLNLN
KWATTPLANQEGPIRSLADLGIITNKQGLLEIKQDKFKTALDNHYKEIGALFAKTAKANDTGINVKSINSTVKSGTYDVV
LTEFTPGVSMSGTIGGLSAISSDGITLTGSADLSGLSINVFSGSAGSRGQITVTDGIAVQLSSLLDAYIEIKGDLEQRKD
QLNNQVKQLNKIQNEIDIRRKSIETRYLKQFTALDTLLSQLQSTSVFLSQQLANLPQLKLK

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

Organism=Escherichia coli, GI1788233, Length=550, Percent_Identity=28, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 58023; Mature: 58023

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSSPGVGSGLDVKNLVDAIVTAEITPSQVRHDKQLNSVNTELSALGQLKSYLTNLQTS
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAKLSSLSQFYTMKSTISDPNYFSATLGTGATKNTYQIEIQKLAQQHSLASSYMTNTGSG
HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCE
TITIDFGTYNSDKTTFTPNPSATSVNITITPGNDSLVAVRDAINNTNSGITASIVQDSQG
EEEEEECCCCCCCEEECCCCCCEEEEEEEECCCCCEEEEEHHCCCCCCCEEEEEEECCCC
SRLTITSSKTGENYAMKISGGVASLNYDPTMGVNSLTETVAAQNSTVKINGLTLVQSSNQ
CEEEEEECCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCH
LNEAITGVTIDLKKAEIGKIVTLTVDDNKDQLTGLINEFIKQYNDTMTFLTNLTGYNNET
HHHHHCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEHHHCCCCCCCC
KQGGVFQGDPQFRNLKLNLNKWATTPLANQEGPIRSLADLGIITNKQGLLEIKQDKFKTA
CCCCEECCCCCCEEEEEEECCEECCCCCCCCCCHHHHHHCCEEECCCCCEEEHHHHHHHH
LDNHYKEIGALFAKTAKANDTGINVKSINSTVKSGTYDVVLTEFTPGVSMSGTIGGLSAI
HHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCEEEEEEECCCCCCCCCCCCCHHHH
SSDGITLTGSADLSGLSINVFSGSAGSRGQITVTDGIAVQLSSLLDAYIEIKGDLEQRKD
CCCCEEEECCCCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHEECCCHHHHHH
QLNNQVKQLNKIQNEIDIRRKSIETRYLKQFTALDTLLSQLQSTSVFLSQQLANLPQLKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
K
C
>Mature Secondary Structure
MELSSPGVGSGLDVKNLVDAIVTAEITPSQVRHDKQLNSVNTELSALGQLKSYLTNLQTS
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAKLSSLSQFYTMKSTISDPNYFSATLGTGATKNTYQIEIQKLAQQHSLASSYMTNTGSG
HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCE
TITIDFGTYNSDKTTFTPNPSATSVNITITPGNDSLVAVRDAINNTNSGITASIVQDSQG
EEEEEECCCCCCCEEECCCCCCEEEEEEEECCCCCEEEEEHHCCCCCCCEEEEEEECCCC
SRLTITSSKTGENYAMKISGGVASLNYDPTMGVNSLTETVAAQNSTVKINGLTLVQSSNQ
CEEEEEECCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCH
LNEAITGVTIDLKKAEIGKIVTLTVDDNKDQLTGLINEFIKQYNDTMTFLTNLTGYNNET
HHHHHCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEHHHCCCCCCCC
KQGGVFQGDPQFRNLKLNLNKWATTPLANQEGPIRSLADLGIITNKQGLLEIKQDKFKTA
CCCCEECCCCCCEEEEEEECCEECCCCCCCCCCHHHHHHCCEEECCCCCEEEHHHHHHHH
LDNHYKEIGALFAKTAKANDTGINVKSINSTVKSGTYDVVLTEFTPGVSMSGTIGGLSAI
HHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCEEEEEEECCCCCCCCCCCCCHHHH
SSDGITLTGSADLSGLSINVFSGSAGSRGQITVTDGIAVQLSSLLDAYIEIKGDLEQRKD
CCCCEEEECCCCCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHEECCCHHHHHH
QLNNQVKQLNKIQNEIDIRRKSIETRYLKQFTALDTLLSQLQSTSVFLSQQLANLPQLKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10678962; 10984043 [H]