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The map label for this gene is 52841503

Identifier: 52841503

GI number: 52841503

Start: 1400011

End: 1400796

Strand: Reverse

Name: 52841503

Synonym: lpg1271

Alternate gene names: NA

Gene position: 1400796-1400011 (Counterclockwise)

Preceding gene: 52841506

Following gene: 52841502

Centisome position: 41.23

GC content: 40.08

Gene sequence:

>786_bases
TTGCGATTCTCACAATCAGCAAAAAACGAGTTTGCAATGCTAAGGCTTATGCTCACAGATGAGCATTGGTCAAAGCTAAG
AACGATCATTCGCGAACACGGAATTTATGACAAACCCAATTTGCGAAAAACAGTCGAAGGGATTTTATACCGTATGCGAA
CAGGATTGCCTTGGCGAGACCTACCAACTTTCTTTGGTGTATGGATTTCAATTTACCAACAATTTAACCGTTGGGCCTCG
AAAAACAAACTAATGGCTATTTTTAAAACCCTTGTTCAGGACCCAGATCTTGAGTGGGAATTTATTGATGGAAGCATTGT
AAAGGCTCATCAGCATAGTACAGGTGCTGCTAGTTCGGATGATGAAGCTATTGGGAAATCTGTAGCTGGGAATACAACAA
AAATACATATGGCGGCTGATGCACATGGTTTGACAATTGATTTCATAGTCACCGGTGGTGAAGTACATAATTGCAAAGTT
GCACCTCAATTCATCACTCAGCTACCATCTGCTGATTATACGATTGCTGATAAGGGATATGACAAGGAGGATTTGCGCCA
TATCATCAGGCAGAAATCATCGCAACCTGTTATCCCAAGAAAAAGTAATTCAACGATAGGAAATGATGATATGGATTGGG
CTTTATACAAGTACCGGCATCTGGTTGAAAATATCTTCGCAAGAATAAAACATTTTCGTGCAATAGCGACAAGGTACGAT
AAATTAAAAAGAAATTATGCCTCTATGGTCGACTTAGCGTGTGGGTTAATGTGGTTACCAATGTGA

Upstream 100 bases:

>100_bases
AGAGACTCAATAAATCCCTGAAGTTTGTTATTAAGTTCTAAATTAGGGCCTGTTTACAATTCGCTGTAATCGATAGATTT
ATAAGAACAAACTCGTAAAC

Downstream 100 bases:

>100_bases
ATTGTAAACAGGCCCTAGTTCAACTTTAAATTATTATAATTTTGTTATCTTTTGCTACAGATTCTGGACAAGCCATTAAT
CCGCGACAAAATTAAAATTT

Product: ISSod6 transposase, IS1301

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MRFSQSAKNEFAMLRLMLTDEHWSKLRTIIREHGIYDKPNLRKTVEGILYRMRTGLPWRDLPTFFGVWISIYQQFNRWAS
KNKLMAIFKTLVQDPDLEWEFIDGSIVKAHQHSTGAASSDDEAIGKSVAGNTTKIHMAADAHGLTIDFIVTGGEVHNCKV
APQFITQLPSADYTIADKGYDKEDLRHIIRQKSSQPVIPRKSNSTIGNDDMDWALYKYRHLVENIFARIKHFRAIATRYD
KLKRNYASMVDLACGLMWLPM

Sequences:

>Translated_261_residues
MRFSQSAKNEFAMLRLMLTDEHWSKLRTIIREHGIYDKPNLRKTVEGILYRMRTGLPWRDLPTFFGVWISIYQQFNRWAS
KNKLMAIFKTLVQDPDLEWEFIDGSIVKAHQHSTGAASSDDEAIGKSVAGNTTKIHMAADAHGLTIDFIVTGGEVHNCKV
APQFITQLPSADYTIADKGYDKEDLRHIIRQKSSQPVIPRKSNSTIGNDDMDWALYKYRHLVENIFARIKHFRAIATRYD
KLKRNYASMVDLACGLMWLPM
>Mature_261_residues
MRFSQSAKNEFAMLRLMLTDEHWSKLRTIIREHGIYDKPNLRKTVEGILYRMRTGLPWRDLPTFFGVWISIYQQFNRWAS
KNKLMAIFKTLVQDPDLEWEFIDGSIVKAHQHSTGAASSDDEAIGKSVAGNTTKIHMAADAHGLTIDFIVTGGEVHNCKV
APQFITQLPSADYTIADKGYDKEDLRHIIRQKSSQPVIPRKSNSTIGNDDMDWALYKYRHLVENIFARIKHFRAIATRYD
KLKRNYASMVDLACGLMWLPM

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3293

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 30080; Mature: 30080

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSQSAKNEFAMLRLMLTDEHWSKLRTIIREHGIYDKPNLRKTVEGILYRMRTGLPWRD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHH
LPTFFGVWISIYQQFNRWASKNKLMAIFKTLVQDPDLEWEFIDGSIVKAHQHSTGAASSD
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCC
DEAIGKSVAGNTTKIHMAADAHGLTIDFIVTGGEVHNCKVAPQFITQLPSADYTIADKGY
HHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCCCCCCEECHHHHHHCCCCCEEECCCCC
DKEDLRHIIRQKSSQPVIPRKSNSTIGNDDMDWALYKYRHLVENIFARIKHFRAIATRYD
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLKRNYASMVDLACGLMWLPM
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFSQSAKNEFAMLRLMLTDEHWSKLRTIIREHGIYDKPNLRKTVEGILYRMRTGLPWRD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHH
LPTFFGVWISIYQQFNRWASKNKLMAIFKTLVQDPDLEWEFIDGSIVKAHQHSTGAASSD
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCC
DEAIGKSVAGNTTKIHMAADAHGLTIDFIVTGGEVHNCKVAPQFITQLPSADYTIADKGY
HHHHHHHHCCCCEEEEEEECCCCCEEEEEEECCCCCCCEECHHHHHHCCCCCEEECCCCC
DKEDLRHIIRQKSSQPVIPRKSNSTIGNDDMDWALYKYRHLVENIFARIKHFRAIATRYD
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLKRNYASMVDLACGLMWLPM
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8126444 [H]