| Definition | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome. |
|---|---|
| Accession | NC_002942 |
| Length | 3,397,754 |
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The map label for this gene is traA
Identifier: 52841473
GI number: 52841473
Start: 1368713
End: 1371382
Strand: Direct
Name: traA
Synonym: lpg1241
Alternate gene names: 52841473
Gene position: 1368713-1371382 (Clockwise)
Preceding gene: 52841468
Following gene: 52841474
Centisome position: 40.28
GC content: 39.93
Gene sequence:
>2670_bases ATTCTCTTTGGGGATTCCGTGGCGATTGCTTTTGCACAAGTTTCTATTCACTCTCGTTCAAAAGGTCATAGTGCTGTAGC TGCGGCTGCTTATCGTTCGGGTGCTCGGCTTTATGATGATCGCATTGGTCGCGCTTACGATTTTTCAAAGCGAGATGATG TTGCTTTTTCTGAAATTCTTTTGCCTGATGGTACTACTGACTCATTTCTGGAGCGTGATTATTTATGGAATGAAGTAGAG CGGGCTGAAAATCGATCGAACTCTCAATTATGTAAGGACTTTGTTTTAGCATTGCCGCGTGAATTGAATTTAGAACAGCA GATTGAATTGGCAAAACGGTTTGCTCGAACGCATTTTGTGGAGAAAGGTTTACCAGCTGATATCGCTATTCATGATCATG GGGATGGCAATCCACATGCGCACATTCTGATTCCAACACGAAGATTGGAGAATAACCGATTTTCCAAATACAAAGCTCGC GATTTAAATCCAGTTTTTGCCAAGGGGTTTTTGGTGGAGCAAGATTACTGGGGTGAACAATGGCGGGAGATGCAGAACGA ATTTTTTATTGAGAACAATCTCGATTTACAGGTGGATGCAAACCACCTGATTGCAGAACGTCATCGCGGTAAGCATCACA ATGCTAATGCACACTACCTGCTTGAAGAAAACCAATTGATTCAACAGGCGCGAATGGAGCTCACTCGAGATAATATCGAT TTGGTGATTGACCATTTATCTACGCAATACAGTGTTTTTACTCGCAGGGATGTTGAACGTTTATTATTTAAAACGTTTCA AGCATCGGATAGCCCACAAGAATATTTACAGTTTGTTGAAAGAGTACTGGGTCATCAGGATCTAGTAGCATTGGGAGATA ATAATAAAGGGGAGCCAAGCTTTACTACACGCACACATTTAATGCAGGAAGCCCAGTTGTTACATGATATTGAAGCGATG ATGGTTTCTAAAAACCATGTAGTCCATCAACCCATAGATAGTCTTGCCCAACAATATCGATTAAGTGAAGAACAATACGA AGCCTTTCGTTATATTACTCAAAGCCCTGATATTTCGGTAGTGATTGGACGGCCGGGAACAGGTAAAAGCTATTTGCTAA AGCCATTAAATGAGTATTATATCCAAGCAGGGATGGAGGTTATTGGTGCTGCATTATCTGGTAAGGTTGCTAAAGCCTTG CAAGCGGAAACAGGCATTACTTCTTCTACGATTAAATCGCTATCCTATCGATTAGCCAATGATATGATGCAGTTAAGTGA TAAACATGTCCTGATTATTGATGAAGCAGGGATGGTTGATTTTTCCAGTATGGGGTACCTGATTAAAGAAGCACACAAGG CAGGTAGTAAAGTGGTGCTGATTGGTGATCCGGATCAATTAAAACCTATTCAAAAAGGTGAAATATTCAGAGGTATTGCT GCTCGCACGGGTTATATTGAGCTTGAAAACATCAAACGACAACAAGATTTGGGGGATAGGCAAGCGAGCCTCAATTTAGC CAAAGGGGATATAGACAAAGCCATTCAGCATTATCAAGATAAGGGAGCGATAACAATTACTGATACCAAGCTGCAAGCCA TAGAGCAAGTAGTTGCGGACTGGAAACAAGATCTTGAGTCAACGAATATGGCGGACTCTATCATGTTGTCTTATACCAGA AAAGCAGTTAATCACCTCAATGACTTGGCTCGTGAAGCGTTAATAGTTGAGAATAAAATTGGTGAAGAGAACATCGTCTA TCAAGGGTTAGAGCGGAGCCTCAAGATATCAACAGGTGAGCGATTATTGCTTAGGGAAAACAACAAAGTCCTGGGGGTTC GTAATGGAGATACAGCTACGGTTAAAGAAATAAATGTACAGCAAATGAAGATTCAATTGGATAGTGGTGAGTTACTGATT ATTCCAAAAGAATATAAGGCATTAGATTATGCATATGCACTGACCGTTCATAAATCCCAAGGCATGACTGCAAAAAAAGT GCGCGTTCTAATTGATAGCAAATACTGGGATAGAAATCTAAGTTTTGTTGCTATGACACGTCACAAAGAACAACTTAATA TCTATGCGGACAAAGAAAATCATCCAACAGAGCAGGCTTTAAAACAAACTTTATCCCGCAGCAGTACTAAAGATAACGTA ATTGATTGGCCATTGGATTTCGCTATCCGAGCAGGGTTTGATTCTGATTCATTGATTAGTAGAGCGTTGAATCATATTGT CGGAGTGGGGCATAAGATAAAGCAGGCTTATAACTTTATTGTTAATTATGAAGCCTCTCTTTTGAAAGCAAGGCATCAGG AACGGTTTCAGGATATCGGACAAGCAATAGCTGATGCTAAACAGGAAGCACTTAAAGTTGATACTAAAGAGTTTGAGAGC AATGATTGCAAAACATCTGAGCAATCCTTTGGAATTTTGAAGAAAGATTTTCCTCAACTTGTTGAGCTTGAAACACTTAT CAAGAGGCGACAGCGAATGACTGGTTACTTTGCTGAAAAAACTGATAAACAAATTATGGCTTTGACACAGCAGTTATTAA CGAATAAGACCTTCGCCAATCAAGTCAAATACCAAGTTCCTGAGTTTTATCAAAAGTTACAAAGTATCGATAATAAACAG AAGGAAAAAGCCTTACTTCAGAATCACTGA
Upstream 100 bases:
>100_bases ATATACAAACTTTCGTTTGTTTGCTAGTATCATGATTCAAACACTTAAAAATCTTTAATGGACAAAGGTTTTTTCATTAT AAAAAGCAACCGATGGATTC
Downstream 100 bases:
>100_bases TGCTAGCAATCAACTATTAAATGCCTCCTTATACCGCAAGTTGGTAATTTTAGGGTGCATTACTTTTACGAGTATTTGTT TATACGATCAAGACTTAGAT
Product: conjugal transfer protein TraA
Products: Hydrolyzed double-stranded DNA [C]
Alternate protein names: NA
Number of amino acids: Translated: 889; Mature: 889
Protein sequence:
>889_residues MLFGDSVAIAFAQVSIHSRSKGHSAVAAAAYRSGARLYDDRIGRAYDFSKRDDVAFSEILLPDGTTDSFLERDYLWNEVE RAENRSNSQLCKDFVLALPRELNLEQQIELAKRFARTHFVEKGLPADIAIHDHGDGNPHAHILIPTRRLENNRFSKYKAR DLNPVFAKGFLVEQDYWGEQWREMQNEFFIENNLDLQVDANHLIAERHRGKHHNANAHYLLEENQLIQQARMELTRDNID LVIDHLSTQYSVFTRRDVERLLFKTFQASDSPQEYLQFVERVLGHQDLVALGDNNKGEPSFTTRTHLMQEAQLLHDIEAM MVSKNHVVHQPIDSLAQQYRLSEEQYEAFRYITQSPDISVVIGRPGTGKSYLLKPLNEYYIQAGMEVIGAALSGKVAKAL QAETGITSSTIKSLSYRLANDMMQLSDKHVLIIDEAGMVDFSSMGYLIKEAHKAGSKVVLIGDPDQLKPIQKGEIFRGIA ARTGYIELENIKRQQDLGDRQASLNLAKGDIDKAIQHYQDKGAITITDTKLQAIEQVVADWKQDLESTNMADSIMLSYTR KAVNHLNDLAREALIVENKIGEENIVYQGLERSLKISTGERLLLRENNKVLGVRNGDTATVKEINVQQMKIQLDSGELLI IPKEYKALDYAYALTVHKSQGMTAKKVRVLIDSKYWDRNLSFVAMTRHKEQLNIYADKENHPTEQALKQTLSRSSTKDNV IDWPLDFAIRAGFDSDSLISRALNHIVGVGHKIKQAYNFIVNYEASLLKARHQERFQDIGQAIADAKQEALKVDTKEFES NDCKTSEQSFGILKKDFPQLVELETLIKRRQRMTGYFAEKTDKQIMALTQQLLTNKTFANQVKYQVPEFYQKLQSIDNKQ KEKALLQNH
Sequences:
>Translated_889_residues MLFGDSVAIAFAQVSIHSRSKGHSAVAAAAYRSGARLYDDRIGRAYDFSKRDDVAFSEILLPDGTTDSFLERDYLWNEVE RAENRSNSQLCKDFVLALPRELNLEQQIELAKRFARTHFVEKGLPADIAIHDHGDGNPHAHILIPTRRLENNRFSKYKAR DLNPVFAKGFLVEQDYWGEQWREMQNEFFIENNLDLQVDANHLIAERHRGKHHNANAHYLLEENQLIQQARMELTRDNID LVIDHLSTQYSVFTRRDVERLLFKTFQASDSPQEYLQFVERVLGHQDLVALGDNNKGEPSFTTRTHLMQEAQLLHDIEAM MVSKNHVVHQPIDSLAQQYRLSEEQYEAFRYITQSPDISVVIGRPGTGKSYLLKPLNEYYIQAGMEVIGAALSGKVAKAL QAETGITSSTIKSLSYRLANDMMQLSDKHVLIIDEAGMVDFSSMGYLIKEAHKAGSKVVLIGDPDQLKPIQKGEIFRGIA ARTGYIELENIKRQQDLGDRQASLNLAKGDIDKAIQHYQDKGAITITDTKLQAIEQVVADWKQDLESTNMADSIMLSYTR KAVNHLNDLAREALIVENKIGEENIVYQGLERSLKISTGERLLLRENNKVLGVRNGDTATVKEINVQQMKIQLDSGELLI IPKEYKALDYAYALTVHKSQGMTAKKVRVLIDSKYWDRNLSFVAMTRHKEQLNIYADKENHPTEQALKQTLSRSSTKDNV IDWPLDFAIRAGFDSDSLISRALNHIVGVGHKIKQAYNFIVNYEASLLKARHQERFQDIGQAIADAKQEALKVDTKEFES NDCKTSEQSFGILKKDFPQLVELETLIKRRQRMTGYFAEKTDKQIMALTQQLLTNKTFANQVKYQVPEFYQKLQSIDNKQ KEKALLQNH >Mature_889_residues MLFGDSVAIAFAQVSIHSRSKGHSAVAAAAYRSGARLYDDRIGRAYDFSKRDDVAFSEILLPDGTTDSFLERDYLWNEVE RAENRSNSQLCKDFVLALPRELNLEQQIELAKRFARTHFVEKGLPADIAIHDHGDGNPHAHILIPTRRLENNRFSKYKAR DLNPVFAKGFLVEQDYWGEQWREMQNEFFIENNLDLQVDANHLIAERHRGKHHNANAHYLLEENQLIQQARMELTRDNID LVIDHLSTQYSVFTRRDVERLLFKTFQASDSPQEYLQFVERVLGHQDLVALGDNNKGEPSFTTRTHLMQEAQLLHDIEAM MVSKNHVVHQPIDSLAQQYRLSEEQYEAFRYITQSPDISVVIGRPGTGKSYLLKPLNEYYIQAGMEVIGAALSGKVAKAL QAETGITSSTIKSLSYRLANDMMQLSDKHVLIIDEAGMVDFSSMGYLIKEAHKAGSKVVLIGDPDQLKPIQKGEIFRGIA ARTGYIELENIKRQQDLGDRQASLNLAKGDIDKAIQHYQDKGAITITDTKLQAIEQVVADWKQDLESTNMADSIMLSYTR KAVNHLNDLAREALIVENKIGEENIVYQGLERSLKISTGERLLLRENNKVLGVRNGDTATVKEINVQQMKIQLDSGELLI IPKEYKALDYAYALTVHKSQGMTAKKVRVLIDSKYWDRNLSFVAMTRHKEQLNIYADKENHPTEQALKQTLSRSSTKDNV IDWPLDFAIRAGFDSDSLISRALNHIVGVGHKIKQAYNFIVNYEASLLKARHQERFQDIGQAIADAKQEALKVDTKEFES NDCKTSEQSFGILKKDFPQLVELETLIKRRQRMTGYFAEKTDKQIMALTQQLLTNKTFANQVKYQVPEFYQKLQSIDNKQ KEKALLQNH
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mobA/mobL family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000606 - InterPro: IPR005053 - InterPro: IPR014136 [H]
Pfam domain/function: PF03389 MobA_MobL; PF01443 Viral_helicase1 [H]
EC number: 3.1.11.5 [C]
Molecular weight: Translated: 101442; Mature: 101442
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFGDSVAIAFAQVSIHSRSKGHSAVAAAAYRSGARLYDDRIGRAYDFSKRDDVAFSEIL CCCCCHHEEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHEE LPDGTTDSFLERDYLWNEVERAENRSNSQLCKDFVLALPRELNLEQQIELAKRFARTHFV CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH EKGLPADIAIHDHGDGNPHAHILIPTRRLENNRFSKYKARDLNPVFAKGFLVEQDYWGEQ HCCCCCEEEEEECCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCHHHHCCEEEECCCCCHH WREMQNEFFIENNLDLQVDANHLIAERHRGKHHNANAHYLLEENQLIQQARMELTRDNID HHHHHHHEEEECCCEEEECCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCHH LVIDHLSTQYSVFTRRDVERLLFKTFQASDSPQEYLQFVERVLGHQDLVALGDNNKGEPS HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC FTTRTHLMQEAQLLHDIEAMMVSKNHVVHQPIDSLAQQYRLSEEQYEAFRYITQSPDISV HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEE VIGRPGTGKSYLLKPLNEYYIQAGMEVIGAALSGKVAKALQAETGITSSTIKSLSYRLAN EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH DMMQLSDKHVLIIDEAGMVDFSSMGYLIKEAHKAGSKVVLIGDPDQLKPIQKGEIFRGIA HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCHHHHHHH ARTGYIELENIKRQQDLGDRQASLNLAKGDIDKAIQHYQDKGAITITDTKLQAIEQVVAD HCCCCEEHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH WKQDLESTNMADSIMLSYTRKAVNHLNDLAREALIVENKIGEENIVYQGLERSLKISTGE HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCC RLLLRENNKVLGVRNGDTATVKEINVQQMKIQLDSGELLIIPKEYKALDYAYALTVHKSQ EEEEECCCCEEEEECCCCCEEEECCEEEEEEEECCCCEEEEECHHHHHEEEEEEEEECCC GMTAKKVRVLIDSKYWDRNLSFVAMTRHKEQLNIYADKENHPTEQALKQTLSRSSTKDNV CCCHHHHEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCC IDWPLDFAIRAGFDSDSLISRALNHIVGVGHKIKQAYNFIVNYEASLLKARHQERFQDIG EECCCCHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH QAIADAKQEALKVDTKEFESNDCKTSEQSFGILKKDFPQLVELETLIKRRQRMTGYFAEK HHHHHHHHHHHHCCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TDKQIMALTQQLLTNKTFANQVKYQVPEFYQKLQSIDNKQKEKALLQNH HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC >Mature Secondary Structure MLFGDSVAIAFAQVSIHSRSKGHSAVAAAAYRSGARLYDDRIGRAYDFSKRDDVAFSEIL CCCCCHHEEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHEE LPDGTTDSFLERDYLWNEVERAENRSNSQLCKDFVLALPRELNLEQQIELAKRFARTHFV CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH EKGLPADIAIHDHGDGNPHAHILIPTRRLENNRFSKYKARDLNPVFAKGFLVEQDYWGEQ HCCCCCEEEEEECCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCHHHHCCEEEECCCCCHH WREMQNEFFIENNLDLQVDANHLIAERHRGKHHNANAHYLLEENQLIQQARMELTRDNID HHHHHHHEEEECCCEEEECCHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCHH LVIDHLSTQYSVFTRRDVERLLFKTFQASDSPQEYLQFVERVLGHQDLVALGDNNKGEPS HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC FTTRTHLMQEAQLLHDIEAMMVSKNHVVHQPIDSLAQQYRLSEEQYEAFRYITQSPDISV HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEE VIGRPGTGKSYLLKPLNEYYIQAGMEVIGAALSGKVAKALQAETGITSSTIKSLSYRLAN EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH DMMQLSDKHVLIIDEAGMVDFSSMGYLIKEAHKAGSKVVLIGDPDQLKPIQKGEIFRGIA HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHCCCCCCCHHHHHHH ARTGYIELENIKRQQDLGDRQASLNLAKGDIDKAIQHYQDKGAITITDTKLQAIEQVVAD HCCCCEEHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHH WKQDLESTNMADSIMLSYTRKAVNHLNDLAREALIVENKIGEENIVYQGLERSLKISTGE HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCC RLLLRENNKVLGVRNGDTATVKEINVQQMKIQLDSGELLIIPKEYKALDYAYALTVHKSQ EEEEECCCCEEEEECCCCCEEEECCEEEEEEEECCCCEEEEECHHHHHEEEEEEEEECCC GMTAKKVRVLIDSKYWDRNLSFVAMTRHKEQLNIYADKENHPTEQALKQTLSRSSTKDNV CCCHHHHEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCC IDWPLDFAIRAGFDSDSLISRALNHIVGVGHKIKQAYNFIVNYEASLLKARHQERFQDIG EECCCCHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH QAIADAKQEALKVDTKEFESNDCKTSEQSFGILKKDFPQLVELETLIKRRQRMTGYFAEK HHHHHHHHHHHHCCHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TDKQIMALTQQLLTNKTFANQVKYQVPEFYQKLQSIDNKQKEKALLQNH HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Double-stranded DNA; H2O; DNA [C]
Specific reaction: Double-stranded DNA + H2O = Hydrolyzed double-stranded DNA Protein + DNA = Protein-DNA [C]
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]