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The map label for this gene is intD [H]

Identifier: 52841461

GI number: 52841461

Start: 1356847

End: 1358064

Strand: Direct

Name: intD [H]

Synonym: lpg1229

Alternate gene names: 52841461

Gene position: 1356847-1358064 (Clockwise)

Preceding gene: 52841460

Following gene: 52841462

Centisome position: 39.93

GC content: 35.06

Gene sequence:

>1218_bases
ATGAAAGCCAAAATTAATAACACCCTGCTAAAAAAATTAGTTCCTCAAGACAAAGAATATGAGGTACACGACACCGATTT
AAAAGGATTTATTCTTAGAGTCTTTCCCTCTGGAACAATGCGCTATGTCTGTCAGTACAAGCGAGGCGGCAAGATTAATA
TTGGGACTGTGGGAGTGATGACTCCAGCTCAGGCTAGAGAAAAAGCAGTCGAAATTTTAAATGACTTTAATAAAGGCATT
GATCCAAAAGCGAAAAGAGGAAGTAATAAACTTAAAAGCCTAGGCGAGTTCTTTGAAAATGAATATACGCCTTGGGTTTT
AACTCATCATAAAAGAGGGGACAAAACGCTCGCTACAATTAGACGCTGTTTTGATAAATTATTTTCCAAGCCTTTGGAAG
AAATAACACCTTCGATTATAGAGCAATGGCGCATCAAACGATTAAATGATGGTATTTCTAATGCAACACTTAATCGAGAT
ATTGGTACATTAAAATCTTTATTTACTAAAGCGGTAGAATGGGGATTTATTAAAGAGAACTACTTAAAAAATTTGAAACT
TTCTAAAATTGATAGAGCACCCAAAGTGCGTTATTTATCTATTGATGAGGAAAGAAATTTAAGGCGAGCCCTATTTGAGC
GAGAAGGGAAGTTAAAGCAAGATCGGAAAAGAGGTAATGAGTGGAGGCAAGCAAGAGGATATGATTTGCTGCCGGAGTAT
GAAGAAAATGAACTTTGTGACTATCTGACACCAATGGTTTTGATTTCAATTAATACTGGATTGAGGCAAGGTGAGTTATT
TCATTTAACGTGGGAAATGATTGATTTACAAGAGCGATCCATCATTATTGCTGGTCAGATTACAAAAAATAGCAGTTCGC
GCTATATACCTCTAAATAATGAAGTTTATGGAATAATAAAGCAACTTTATGAAAAAAGTAATTCAAAGAAGGGGCTGGTA
TTTCTCAGTAAAGACAATAAGCCTTTTAATAATATTAAACGATCTTGGACAACAATCTTAAAAAAGGCACAAATAACTGA
ATTTCGCTGGCATGATTTACGGCATCATTTCGCTAGCAAACTTGTTATGGCGGGTATTGATTTAAATACTGTGCGAGAGC
TATTAGGTCATTCGGATATAAAAATGACATTAAGATATGCACATCTAGCACCTGAGCATAAAATTAAAGCAGTTAATAAG
ATCAATTGGACTGATTAA

Upstream 100 bases:

>100_bases
GGGTATCAATTAACACGTGATATACCTAAACAGTTGAGAGATGCTCTACCAGATGCAGATCAATTAGAAGAAAAAATCAT
GTTTGAGTTGGGGCTAAATA

Downstream 100 bases:

>100_bases
ACTTACATTTATTAAATGCTTTCCAGTCTTCGACACCTTGGTTCGAAGCCTGATACTCTAATTTTAAATTCGTTATAAAT
CAATAACTAGTGAAGCGTCA

Product: site specific recombinase

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MKAKINNTLLKKLVPQDKEYEVHDTDLKGFILRVFPSGTMRYVCQYKRGGKINIGTVGVMTPAQAREKAVEILNDFNKGI
DPKAKRGSNKLKSLGEFFENEYTPWVLTHHKRGDKTLATIRRCFDKLFSKPLEEITPSIIEQWRIKRLNDGISNATLNRD
IGTLKSLFTKAVEWGFIKENYLKNLKLSKIDRAPKVRYLSIDEERNLRRALFEREGKLKQDRKRGNEWRQARGYDLLPEY
EENELCDYLTPMVLISINTGLRQGELFHLTWEMIDLQERSIIIAGQITKNSSSRYIPLNNEVYGIIKQLYEKSNSKKGLV
FLSKDNKPFNNIKRSWTTILKKAQITEFRWHDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYAHLAPEHKIKAVNK
INWTD

Sequences:

>Translated_405_residues
MKAKINNTLLKKLVPQDKEYEVHDTDLKGFILRVFPSGTMRYVCQYKRGGKINIGTVGVMTPAQAREKAVEILNDFNKGI
DPKAKRGSNKLKSLGEFFENEYTPWVLTHHKRGDKTLATIRRCFDKLFSKPLEEITPSIIEQWRIKRLNDGISNATLNRD
IGTLKSLFTKAVEWGFIKENYLKNLKLSKIDRAPKVRYLSIDEERNLRRALFEREGKLKQDRKRGNEWRQARGYDLLPEY
EENELCDYLTPMVLISINTGLRQGELFHLTWEMIDLQERSIIIAGQITKNSSSRYIPLNNEVYGIIKQLYEKSNSKKGLV
FLSKDNKPFNNIKRSWTTILKKAQITEFRWHDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYAHLAPEHKIKAVNK
INWTD
>Mature_405_residues
MKAKINNTLLKKLVPQDKEYEVHDTDLKGFILRVFPSGTMRYVCQYKRGGKINIGTVGVMTPAQAREKAVEILNDFNKGI
DPKAKRGSNKLKSLGEFFENEYTPWVLTHHKRGDKTLATIRRCFDKLFSKPLEEITPSIIEQWRIKRLNDGISNATLNRD
IGTLKSLFTKAVEWGFIKENYLKNLKLSKIDRAPKVRYLSIDEERNLRRALFEREGKLKQDRKRGNEWRQARGYDLLPEY
EENELCDYLTPMVLISINTGLRQGELFHLTWEMIDLQERSIIIAGQITKNSSSRYIPLNNEVYGIIKQLYEKSNSKKGLV
FLSKDNKPFNNIKRSWTTILKKAQITEFRWHDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYAHLAPEHKIKAVNK
INWTD

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=170, Percent_Identity=28.8235294117647, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47248; Mature: 47248

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKINNTLLKKLVPQDKEYEVHDTDLKGFILRVFPSGTMRYVCQYKRGGKINIGTVGVM
CCCCHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCCHHHHHHHHCCCCEEEECEEECC
TPAQAREKAVEILNDFNKGIDPKAKRGSNKLKSLGEFFENEYTPWVLTHHKRGDKTLATI
CCHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
RRCFDKLFSKPLEEITPSIIEQWRIKRLNDGISNATLNRDIGTLKSLFTKAVEWGFIKEN
HHHHHHHHHCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
YLKNLKLSKIDRAPKVRYLSIDEERNLRRALFEREGKLKQDRKRGNEWRQARGYDLLPEY
HHHCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCCCCC
EENELCDYLTPMVLISINTGLRQGELFHLTWEMIDLQERSIIIAGQITKNSSSRYIPLNN
CCCHHHHHHCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCEEEEEEEECCCCCCEECCCC
EVYGIIKQLYEKSNSKKGLVFLSKDNKPFNNIKRSWTTILKKAQITEFRWHDLRHHFASK
HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVMAGIDLNTVRELLGHSDIKMTLRYAHLAPEHKIKAVNKINWTD
HHHCCCCHHHHHHHHCCCCHHEEEHHHHCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MKAKINNTLLKKLVPQDKEYEVHDTDLKGFILRVFPSGTMRYVCQYKRGGKINIGTVGVM
CCCCHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCCCHHHHHHHHCCCCEEEECEEECC
TPAQAREKAVEILNDFNKGIDPKAKRGSNKLKSLGEFFENEYTPWVLTHHKRGDKTLATI
CCHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
RRCFDKLFSKPLEEITPSIIEQWRIKRLNDGISNATLNRDIGTLKSLFTKAVEWGFIKEN
HHHHHHHHHCHHHHHCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
YLKNLKLSKIDRAPKVRYLSIDEERNLRRALFEREGKLKQDRKRGNEWRQARGYDLLPEY
HHHCCCHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCCCCC
EENELCDYLTPMVLISINTGLRQGELFHLTWEMIDLQERSIIIAGQITKNSSSRYIPLNN
CCCHHHHHHCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCEEEEEEEECCCCCCEECCCC
EVYGIIKQLYEKSNSKKGLVFLSKDNKPFNNIKRSWTTILKKAQITEFRWHDLRHHFASK
HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVMAGIDLNTVRELLGHSDIKMTLRYAHLAPEHKIKAVNKINWTD
HHHCCCCHHHHHHHHCCCCHHEEEHHHHCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]