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The map label for this gene is yfgC [H]

Identifier: 52841410

GI number: 52841410

Start: 1301488

End: 1302936

Strand: Reverse

Name: yfgC [H]

Synonym: lpg1176

Alternate gene names: 52841410

Gene position: 1302936-1301488 (Counterclockwise)

Preceding gene: 52841420

Following gene: 52841409

Centisome position: 38.35

GC content: 38.51

Gene sequence:

>1449_bases
TTGAGTAGCCTAATGATTAAATTGAACTTAAATTATAAGTTAATCACGAAAAAGACATTACCTAAACTATTTTACTGGGG
TTTGGGGATCGTCTTCTTTTTTTTAGCACCTACAACTAATGCCGGGAGTCTTTCACCCTATACAACCAAAGAACTGGAAC
AATTAGAAAGAGAATTTATTCAACTTATTAATCAGTCGGACAGCGTAGAGCGCAATCCTTTGGCCAGTCAATACATCAAC
TCCATAGGAAAAAAACTGGCACATTATGGCCGTATCAAAACACCTTATTTTTTTATTGTTAAATCCAAAGAAATCAATGC
ATTTGCAGGTCCAGGAGGGTACATAGGCATTAATACCCAACTCATTTTAACGAGCAGCAATGAAAGTGAACTGGCAGCTG
TAATGGCTCATGAAATTGCGCATGTTCGCTTACATCATCTTTACAGCATTATAGAACACCAAAAACAGATGCGTGTTCCA
TTATTAGCCTCTATTCTGGCGTCTGCAGCCTTGGGCGTCTTGAATCCAACTGTCGGGATGGGCGCTATGATGGCATCCGT
TTCCGGATTTTCCCAGGACAACATCAATTTTACACGCTCAAAAGAAAAAGAAGCCGACAGAATTGGTATAGACATGCTGA
TTAAGGCAGGCTTCAATCCTCAAGGTATGGCCGCATTTTTTAATAAAATGCAAGAAAATTCCCGTTATTATTACACTGCC
AATATTCCAGCAATACTGCGGACTCACCCCCTGGATGCTGACAGGATAGCTGAGGCTGAAAACAGAACCAGCCGTTTGCC
TAAAAAACATTATACTGATTCTTTGGACTATGCCTTATTTAAAGAGTTAATCAGAGTTTCTGTCGCCTCTAATAATAAAC
AAATTCTTGATTATTATGAGCATCATTGCCATAAAAAAAATCCTGCCACTGCTTGCCAGTATGGATACGTACTTGCCTTG
TTAAATAATAACAATTTTCAAAAAGCAGCTGAAAAATTAAACCCTTTACTGTTACAGGATAATAGTAATCTCAATTTTCA
AATTGCTATGGCTCAAGCTGAATTAGGTTTATCACAATATCAATCAGCACTCTCCCGTCTTGCTGAATTACAAAATAATT
TTCCTGACAATTATGCTGCTCTAATGGCATACGCCCAAGGATTGTTAACTGCAAACCAACCTCAAAAAGCTACAGCCGTA
CTTCTTAAGGGTAGTAGGCAATACAAAGAGGACTTACCGCTTTGCCGAGAATTGGCAAGGGCTCAAGCTGAATCCCATCA
GAAAAGTTATGCCTATTTTACTCAAGCACAATGCTTGCTACTTGAGGGGCAAAAAAGAGGTGCTATTGCTCAATTAAAAG
TGGCGCAGAAACTGGCCAAAAGGGATGCTTATTTATCCGCAAGAATTTCAGCAAAAATTGATGAAATAAAATTTATGGTT
GAAAACTAA

Upstream 100 bases:

>100_bases
CTCCCCAGTTTGGCTTGTTCAAGTGCTGCAAGCAGAAACTGTTCGTGCATATATTAACCACCTTCTTAATGTGGTCGAAT
GATAACAAATTATTCAATTA

Downstream 100 bases:

>100_bases
TCTAGATATAGATTAATTAAAATAAAATGATCTCATTTATCATTCGCCAAGAGTGTAAGGGTTTAATTTTGCTTTGTTCA
GGCCCAATATAATTAATTAA

Product: Zn-dependent protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MSSLMIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYIN
SIGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVP
LLASILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTA
NIPAILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLAL
LNNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAV
LLKGSRQYKEDLPLCRELARAQAESHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKRDAYLSARISAKIDEIKFMV
EN

Sequences:

>Translated_482_residues
MSSLMIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYIN
SIGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVP
LLASILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTA
NIPAILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLAL
LNNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAV
LLKGSRQYKEDLPLCRELARAQAESHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKRDAYLSARISAKIDEIKFMV
EN
>Mature_481_residues
SSLMIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYINS
IGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPL
LASILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTAN
IPAILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLALL
NNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAVL
LKGSRQYKEDLPLCRELARAQAESHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKRDAYLSARISAKIDEIKFMVE
N

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=449, Percent_Identity=31.4031180400891, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 54093; Mature: 53962

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLMIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFI
CCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
QLINQSDSVERNPLASQYINSIGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQ
HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCEEEECEE
LILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLASILASAALGVLNPTVGM
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHH
GAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTA
HHHHHHHCCCCCCCCCCCCCCHHHHHHHCHHHHEECCCCCCHHHHHHHHHHHCCCEEEEE
NIPAILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYE
CCCEEEECCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
HHCHKKNPATACQYGYVLALLNNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQY
HHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCEEEECCCCCEEEEEEHHHHCCHHHH
QSALSRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAVLLKGSRQYKEDLPLCRELAR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCHHHHHCCHHHHHHHH
AQAESHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKRDAYLSARISAKIDEIKFMV
HHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
EN
CC
>Mature Secondary Structure 
SSLMIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFI
CCEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
QLINQSDSVERNPLASQYINSIGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQ
HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCEEEECEE
LILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLASILASAALGVLNPTVGM
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHH
GAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTA
HHHHHHHCCCCCCCCCCCCCCHHHHHHHCHHHHEECCCCCCHHHHHHHHHHHCCCEEEEE
NIPAILRTHPLDADRIAEAENRTSRLPKKHYTDSLDYALFKELIRVSVASNNKQILDYYE
CCCEEEECCCCCHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
HHCHKKNPATACQYGYVLALLNNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQY
HHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCEEEECCCCCEEEEEEHHHHCCHHHH
QSALSRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAVLLKGSRQYKEDLPLCRELAR
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCHHHHHCCHHHHHHHH
AQAESHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKRDAYLSARISAKIDEIKFMV
HHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
EN
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]