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The map label for this gene is rdgC

Identifier: 52841420

GI number: 52841420

Start: 1314772

End: 1315716

Strand: Reverse

Name: rdgC

Synonym: lpg1187

Alternate gene names: 52841420

Gene position: 1315716-1314772 (Counterclockwise)

Preceding gene: 52841421

Following gene: 52841410

Centisome position: 38.72

GC content: 39.47

Gene sequence:

>945_bases
CTGATTATGTGGTTCAATAATGCACTGATGTTTCAATACAAACTAGACGGTGGATGTGATTTAAACCATTCTTTGACTGA
AGAAGCGCTTAAGCCCTGCCCCCCCCATGCTCGCTTTACTTATGGCTGGGTTCCTGCGTTTGAGCAGGAAATGGTGCATG
AAGTAGCTGGTAGCACGCTTATTTGCCTGGGTAAAGAAGAGCGAATTCTCCCTAGAGGAGTCATTAATAAAATGCTCAAA
GAAAAAATTCAGCAAATAGAAGCAGCCCAGGGTCGACCGGTAAAACGCGCAGAAAAGGCTCAAATGGCTGAGGATCTTGA
ATTTGAACTATTGCCTAAATCCTTCTGTGTTCAAAAAAAACTTTTAGCGATTCTTGATAGTGTCAGTCAGAGATTAATTA
TTAATACTTCAAGCAACAATCAGGCGTCTCAGTTGACTTCTTTTTTGCGTAAATCAATCCCTGGTATTGTGATAGAACCA
TTAAACCTTACCGAAAATCTTGCCTTGCGATTCGCAGAATGGATCCATTCTCCAGCAACTCTACCTGATGACTTTCAATT
AGCCTCCGATTGTTTACTCTTTTCTCTTGAAGATGAAAAAAAACGAGTCCATTGTAAAGGCTACGAATTACCTGCCGAAG
AAATCCTGACTCTATTGGCTCAAGGTATGGGGACTGCAGAAATCTCATTAATTTGGAAAGAGCGGATTCAGTTCACCTTG
ACGCAGGATTTTACTTTTAAAAAACTGAAAAGCCTTGATTATCTGATCGACGATTTTAATGAGATCAGACAATTGGAAGA
AGAGTATCAAAGACAAGATGCCGCGTTGACCTTATTAAGTGGGGAGTTAAGAGAACTTAGTAACGGATTAATGAAGATAT
TTGTTAATCATGCAGAAATGAAATCGGCTCAAATTGAAAAAGTTGCAGAAGATTGCACAATATAA

Upstream 100 bases:

>100_bases
GGTCTGTTGGCAGTTTGCTCTCTTGCGTCGAAATGGCAACAGCCCCTAATCATCGCAGTAAAATGCTATCCGTGATAACA
TCGCAAATTTATTTTAAGGA

Downstream 100 bases:

>100_bases
AGTCGTATCATTTTAACCCGTAACCTATCGAGGGAGCTCCTTTGCTAACAGAGCTCCCTCTCATCTTGATTCAAGAGAAA
ACGAGTGGATTGCACATCAC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MIMWFNNALMFQYKLDGGCDLNHSLTEEALKPCPPHARFTYGWVPAFEQEMVHEVAGSTLICLGKEERILPRGVINKMLK
EKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEP
LNLTENLALRFAEWIHSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTL
TQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELSNGLMKIFVNHAEMKSAQIEKVAEDCTI

Sequences:

>Translated_314_residues
MIMWFNNALMFQYKLDGGCDLNHSLTEEALKPCPPHARFTYGWVPAFEQEMVHEVAGSTLICLGKEERILPRGVINKMLK
EKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEP
LNLTENLALRFAEWIHSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTL
TQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELSNGLMKIFVNHAEMKSAQIEKVAEDCTI
>Mature_314_residues
MIMWFNNALMFQYKLDGGCDLNHSLTEEALKPCPPHARFTYGWVPAFEQEMVHEVAGSTLICLGKEERILPRGVINKMLK
EKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEP
LNLTENLALRFAEWIHSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTL
TQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELSNGLMKIFVNHAEMKSAQIEKVAEDCTI

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=304, Percent_Identity=29.2763157894737, Blast_Score=144, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 35823; Mature: 35823

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMWFNNALMFQYKLDGGCDLNHSLTEEALKPCPPHARFTYGWVPAFEQEMVHEVAGSTL
CEEEECCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHCCCEE
ICLGKEERILPRGVINKMLKEKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKK
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCHHHHHHHH
LLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLNLTENLALRFAEWIHSPAT
HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCC
LPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTL
CCCHHHHHHHHEEEEECCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHEEHHHHHEEE
TQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELSNGLMKIFVNHAEM
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSAQIEKVAEDCTI
HHHHHHHHHHHCCC
>Mature Secondary Structure
MIMWFNNALMFQYKLDGGCDLNHSLTEEALKPCPPHARFTYGWVPAFEQEMVHEVAGSTL
CEEEECCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHCCCEE
ICLGKEERILPRGVINKMLKEKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKK
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCHHHHHHHH
LLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLNLTENLALRFAEWIHSPAT
HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCC
LPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTL
CCCHHHHHHHHEEEEECCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHEEHHHHHEEE
TQDFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELSNGLMKIFVNHAEM
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSAQIEKVAEDCTI
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA