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The map label for this gene is 52841403

Identifier: 52841403

GI number: 52841403

Start: 1291551

End: 1292912

Strand: Reverse

Name: 52841403

Synonym: lpg1169

Alternate gene names: NA

Gene position: 1292912-1291551 (Counterclockwise)

Preceding gene: 52841409

Following gene: 52841402

Centisome position: 38.05

GC content: 38.99

Gene sequence:

>1362_bases
TTGTTCCGGAGTGTTGTTGTGAGCGTCCGTCAACCAGCCGTAGCTGGGTATTTTTATCCTGACGATCCATTGACTTTAAA
GCAAACCGTATTGAATTTCCTGGACCAAGCACCAATTCATAAGCCAGCTCCAAAAGCAATACTGGTTCCACATGCTGGTT
ATGTCTATTCAGGAGCTGTAGCAGCTTCTGCTTATGCCTCGTTACGCGATAAAAAAGACACCATCAATAAAATCATACTA
TTAGGCCCTGCGCATAGATTGTATTTCAAAGGCATTGCCTATGATCCTGTTGATAAATTTGCCACGCCGTTAGGAGAAAT
TGATCAAGATAAAGAGCTGCTAACTCAAATTATAGATCTACCCTATGTCTATTCACTTCCTGAAGCTCACCAAAATGAAC
ATTGTCTGGAAGTACAATTGCCTTTCTGCCAAATGATATTCTCCAAATTTAAAATACTCCCCCTGGTTATTGGAGAAACA
AATCCTCAAGACGTAGCCCGTCTAATAGCCCGAATATGGGGTGGTGATGATACCCTCCTGATTATCAGCTCTGATTTAAG
CCATTATCTTCCCTATCACATAGCCCAAAGAGAAGATAAAAAGACTTGCCTTTCCATAGACACTTTAAATGGTGAAGAAA
TACTTCACGATGCCGCTTGTGGTTATTTTCCTCTGCGCGGTTTCCTGTATTTCGGTCGCCAAAATCATGTTTACAGCCGT
CTGCTCGATTTACGCAACTCAGGCGATACGGCTGGAGATAAGGAAAGAGTAGTAGGCTATGCCGCTTATCACTTCTACCA
AAAACTTAAATTTTCAGAGCATTGCGCAGATGAATTGAAGTACATCGCAAAAGAAACAATACGATTACAAACAGAAGAAA
ATAAAGCATTAACCATTAATTACAATGATTATAGTCAATTATTACAGATGCGAGTTCCTACTTTTATTACTCTAAAAAAG
AATGGCATGCTAAGAGGTTGTATGGGAAGCCTGACAACTAAAGATCCATTAGCTGAGAACATCATTTACAATTCCATACG
GGCAGCAAGTGCAGACCCACGCTTCCCCCAAATAAAGCCATGTGAACTAAAAGAGCTGTCACTAACTATTTCGTTAATTA
AACCATTATCTCCTTTACATTTTGACAGTGAAGAAGAGCTCAAATCACAACTGCAAATTGGTCTCGATGGTTTAGTATTA
ATTTGTGGTCCCTATCAAGCTACTTTTTTACCTTCTGTATGGGAGTCTGTTAAAACAAAAGATGAGTTTATTAATCATTT
AAAATTAAAAATGGGGCTTTCAGAAAACTTCTGGTCTTCAGAAATGAGAGCACTTCGCTACGCAACAGAAATAATAAAAT
AA

Upstream 100 bases:

>100_bases
CCATCTTCCAGCTTATGCCAGTATTTGGTTGGAATAGTATCAAACATCAAATAGCCCACAATCAACTCTTAGTCTATATT
TATAAGTATAGTATGTTCAG

Downstream 100 bases:

>100_bases
ATTGAAAAACTCATTAATAATGCTCAAATAAGAATCCAGCCCCAAATATTATTTTCATATAGCCCAGATTAACAAGATAT
AAAATCAGCAATTTTGCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MFRSVVVSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGAVAASAYASLRDKKDTINKIIL
LGPAHRLYFKGIAYDPVDKFATPLGEIDQDKELLTQIIDLPYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVIGET
NPQDVARLIARIWGGDDTLLIISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFGRQNHVYSR
LLDLRNSGDTAGDKERVVGYAAYHFYQKLKFSEHCADELKYIAKETIRLQTEENKALTINYNDYSQLLQMRVPTFITLKK
NGMLRGCMGSLTTKDPLAENIIYNSIRAASADPRFPQIKPCELKELSLTISLIKPLSPLHFDSEEELKSQLQIGLDGLVL
ICGPYQATFLPSVWESVKTKDEFINHLKLKMGLSENFWSSEMRALRYATEIIK

Sequences:

>Translated_453_residues
MFRSVVVSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGAVAASAYASLRDKKDTINKIIL
LGPAHRLYFKGIAYDPVDKFATPLGEIDQDKELLTQIIDLPYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVIGET
NPQDVARLIARIWGGDDTLLIISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFGRQNHVYSR
LLDLRNSGDTAGDKERVVGYAAYHFYQKLKFSEHCADELKYIAKETIRLQTEENKALTINYNDYSQLLQMRVPTFITLKK
NGMLRGCMGSLTTKDPLAENIIYNSIRAASADPRFPQIKPCELKELSLTISLIKPLSPLHFDSEEELKSQLQIGLDGLVL
ICGPYQATFLPSVWESVKTKDEFINHLKLKMGLSENFWSSEMRALRYATEIIK
>Mature_453_residues
MFRSVVVSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGAVAASAYASLRDKKDTINKIIL
LGPAHRLYFKGIAYDPVDKFATPLGEIDQDKELLTQIIDLPYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVIGET
NPQDVARLIARIWGGDDTLLIISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFGRQNHVYSR
LLDLRNSGDTAGDKERVVGYAAYHFYQKLKFSEHCADELKYIAKETIRLQTEENKALTINYNDYSQLLQMRVPTFITLKK
NGMLRGCMGSLTTKDPLAENIIYNSIRAASADPRFPQIKPCELKELSLTISLIKPLSPLHFDSEEELKSQLQIGLDGLVL
ICGPYQATFLPSVWESVKTKDEFINHLKLKMGLSENFWSSEMRALRYATEIIK

Specific function: Unknown

COG id: COG1355

COG function: function code R; Predicted dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0103 family [H]

Homologues:

Organism=Homo sapiens, GI7705720, Length=191, Percent_Identity=26.7015706806283, Blast_Score=86, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI32566861, Length=187, Percent_Identity=26.2032085561497, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI25146594, Length=223, Percent_Identity=25.5605381165919, Blast_Score=82, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6322467, Length=205, Percent_Identity=31.219512195122, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI21357419, Length=191, Percent_Identity=28.2722513089005, Blast_Score=92, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020619
- InterPro:   IPR002737 [H]

Pfam domain/function: PF01875 Memo [H]

EC number: NA

Molecular weight: Translated: 51328; Mature: 51328

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS51112 AMMECR1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRSVVVSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGAV
CCCHHEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHH
AASAYASLRDKKDTINKIILLGPAHRLYFKGIAYDPVDKFATPLGEIDQDKELLTQIIDL
HHHHHHHHHHHHHHHCEEEEECCCCEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHCC
PYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVIGETNPQDVARLIARIWGGDDTLL
CCEECCCCCCCCCCEEEEECHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCEEE
IISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFGRQNHVYSR
EEECCHHHHCCHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHEEEECCCCHHHHH
LLDLRNSGDTAGDKERVVGYAAYHFYQKLKFSEHCADELKYIAKETIRLQTEENKALTIN
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEE
YNDYSQLLQMRVPTFITLKKNGMLRGCMGSLTTKDPLAENIIYNSIRAASADPRFPQIKP
ECHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
CELKELSLTISLIKPLSPLHFDSEEELKSQLQIGLDGLVLICGPYQATFLPSVWESVKTK
CCCHHHHEEHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
DEFINHLKLKMGLSENFWSSEMRALRYATEIIK
HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFRSVVVSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGAV
CCCHHEEECCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHH
AASAYASLRDKKDTINKIILLGPAHRLYFKGIAYDPVDKFATPLGEIDQDKELLTQIIDL
HHHHHHHHHHHHHHHCEEEEECCCCEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHCC
PYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVIGETNPQDVARLIARIWGGDDTLL
CCEECCCCCCCCCCEEEEECHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCEEE
IISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFGRQNHVYSR
EEECCHHHHCCHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHEEEECCCCHHHHH
LLDLRNSGDTAGDKERVVGYAAYHFYQKLKFSEHCADELKYIAKETIRLQTEENKALTIN
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEE
YNDYSQLLQMRVPTFITLKKNGMLRGCMGSLTTKDPLAENIIYNSIRAASADPRFPQIKP
ECHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
CELKELSLTISLIKPLSPLHFDSEEELKSQLQIGLDGLVLICGPYQATFLPSVWESVKTK
CCCHHHHEEHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
DEFINHLKLKMGLSENFWSSEMRALRYATEIIK
HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]