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The map label for this gene is yciR [C]

Identifier: 52841402

GI number: 52841402

Start: 1289130

End: 1291397

Strand: Reverse

Name: yciR [C]

Synonym: lpg1168

Alternate gene names: 52841402

Gene position: 1291397-1289130 (Counterclockwise)

Preceding gene: 52841403

Following gene: 52841400

Centisome position: 38.01

GC content: 34.96

Gene sequence:

>2268_bases
ATGGATAATTCATTTGTATTCAATGAAACGACCTTAAAGCGTGTACCCCATTTTTTGGTATTAATTATTATTTTATTGTT
AGGCCTGCCTTACATAGGTTTAAACTGGGGTTTGGACTTTAGTAATTTGGCCATTACAATAAATGATGGGAAAATAGCAG
GTTCCCAACTCATTGAGTCTCAAATTCGCGGTTACTTCAGACAAACTCTCTTACAATGGTCAGGATTTTCTCTTGCTGCA
GTCACCGTGTTATTAGCGTTCACTCAGTATCGACTGAGTAATGATAAAATTGCTTTAATTATTGGCCTTGCCATTCTATT
CTCTGGCTCCATTGAAGCACTTCATACCTTGGTTATTGATGGCTTAGCCTTGAAAACAGCAGATAAGAATAACCTGGATG
CCTTAATTTGGGTTTTCTCTAATAGTGTTAGCGGCTTTATTCTAATCATCGGACTTTCTTTACTGGCCCATGCAAGCGAT
GATAAACCAGTGAGATTGGTAACTTTTATTCTACTGACTACTTTTTTGGTCTTGGCTGCTATCGCAGTCATTTATTATGC
CGCTGTAATAATACAAATTCCTGATATGTGGCTTTATGATTCTTATGTTTCCAGACCTTTTGAACTCATATCCGTCTTTA
TCTATCTTATGTTGATGATTATTGTTTACCCAAAAATCTATGCATCTTACCCGACTATTTTATCTGATTCTGTATTCTAT
ATGTCACTCACCCAAGTCGTGTTGGCTATCTACATCATGCTATTATCAACAACTCCGTATGACAGTGCCTTTAATATAGC
ATATTTTCTTAAAGTGGTTGTTTATTTTATACCTTGCACCTGTTTTGTAATTAATTACGTTTTTTCATACTCAGCGGTAC
TGGAAGGGCAAAAAAACTTAAAAATAAAACAGGAAGAGTTAAAATATATGGCCTCTCATGATCCTCTGACAAACCTGTTT
AATCGCAGGGAATTTGAAGATTTGCTTGATAAATCCATTGCTAATGGCCAAAGAAATAACTCTTCCCTGGCTTTACTGCT
TATTGATTTAGATAATTTCAAGGCAATAAATGACACATTTGGTCATTTTCATGGCGATGAACTTTTAAAACAATTTGCCA
ATCGCCTGGTTTTACTAGTTCGAAAAGGTGATCTTTTATCCAGAGTGGGTGGAGATGAATTTACATTAATCTCTCTGAAT
ATAGAATCCCCTTCCAGCGCAAGGCATCTGGCAGAACGAATTTTAAATGAATTAAACAGTCCCTATACTATCAATGGCAA
ATTAATCACAGTAACGGTCAGTATAGGAATATCTATTTTTCCTGATGATGGAAATACTACAGAAGATCTGTTAAGAAAAG
CGGACTTGGCTATGTATAAAGCAAAAAACTCAGGAAAAAATACCTATCAATTTTATACTGAACAACTAGGTTATTCACAG
CATAGGGAATCCGAGCTGGAATCTCATCTTCGAAAAGCATTACAAAATGATGAATTTGAACTTTATTACCAACCCAAATT
TAACCTGATTAATATGGAGATTATTGGCGCAGAAATTCTTTTACGCTGGAATAATGAAGCCCTGGGAGGAGTGTCTCCTA
ATGAGTTTATACCAGTAGCAGAAAACACCGGATTAATAACAGAACTGAGTCAATGGGTTTTACAAAAATCGTGCATACAA
ATAATGCACTGGGCTAGTCAATACAACAAGATGCTTTCCTTTTCCATAAATGTTTCGCCTGTTCAATTAACAAATCCACA
ATTTCCTAAAATTCTTGAAAAAATACTACAGGAATATCAATACCCTGCAGAATATCTCGAGCTTGAAATTACTGAAAATG
CTTTAATGGGTGATCAAGATGAAATCTCCAAAATGCTTAATGTAATTTCCGACTTGGGAATAAAGTTGTCATTGGATGAT
TTTGGCAAGGAATACTCCTCCCTTAACAGACTAAAAACTCTCCCTATTGACAGTTTAAAAATTGATAAAACATTTATCTC
TGATATACACAACGAACATGAGAAAGTAGTCATTATAGACATTATTATTAAATTGGCTAATGAGTTAGGAATGAGTATTG
TTGCCGAGGGTATTGAAACCATACCTCAATTAAAATATCTTGTGTCAAGAAAATGTCATTTTGGTCAAGGCTTCCTCCTG
AGTAAGCCCTTAACTGCAAATGAGTTCACTTCAATTGCTTATACCAAGTTGGGAAAAACCAAATCTAACGCAAAAGTCAT
TTCATTAATTAACAATAACAGACTTTAA

Upstream 100 bases:

>100_bases
TTCATATAGCCCAGATTAACAAGATATAAAATCAGCAATTTTGCCAATAACAGGCACATTTTATGCTAATTTTAAAATAT
AGGAATTTTGAGATACAAAA

Downstream 100 bases:

>100_bases
TTAGAACCATATACTGGATCTTTCAAAATGTATTTCTTATAGATGCTGTGCATTTTAGGTGATATCGTTCATTTAAGGAT
ATAAAAGGCTTTTCTTTGCC

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 755; Mature: 755

Protein sequence:

>755_residues
MDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIESQIRGYFRQTLLQWSGFSLAA
VTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALKTADKNNLDALIWVFSNSVSGFILIIGLSLLAHASD
DKPVRLVTFILLTTFLVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFY
MSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEELKYMASHDPLTNLF
NRREFEDLLDKSIANGQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLN
IESPSSARHLAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGYSQ
HRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIPVAENTGLITELSQWVLQKSCIQ
IMHWASQYNKMLSFSINVSPVQLTNPQFPKILEKILQEYQYPAEYLELEITENALMGDQDEISKMLNVISDLGIKLSLDD
FGKEYSSLNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQGFLL
SKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRL

Sequences:

>Translated_755_residues
MDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIESQIRGYFRQTLLQWSGFSLAA
VTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALKTADKNNLDALIWVFSNSVSGFILIIGLSLLAHASD
DKPVRLVTFILLTTFLVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFY
MSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEELKYMASHDPLTNLF
NRREFEDLLDKSIANGQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLN
IESPSSARHLAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGYSQ
HRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIPVAENTGLITELSQWVLQKSCIQ
IMHWASQYNKMLSFSINVSPVQLTNPQFPKILEKILQEYQYPAEYLELEITENALMGDQDEISKMLNVISDLGIKLSLDD
FGKEYSSLNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQGFLL
SKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRL
>Mature_755_residues
MDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIESQIRGYFRQTLLQWSGFSLAA
VTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALKTADKNNLDALIWVFSNSVSGFILIIGLSLLAHASD
DKPVRLVTFILLTTFLVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFY
MSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEELKYMASHDPLTNLF
NRREFEDLLDKSIANGQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLN
IESPSSARHLAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGYSQ
HRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIPVAENTGLITELSQWVLQKSCIQ
IMHWASQYNKMLSFSINVSPVQLTNPQFPKILEKILQEYQYPAEYLELEITENALMGDQDEISKMLNVISDLGIKLSLDD
FGKEYSSLNRLKTLPIDSLKIDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQGFLL
SKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=33.3333333333333, Blast_Score=265, Evalue=1e-71,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=31.002331002331, Blast_Score=229, Evalue=4e-61,
Organism=Escherichia coli, GI226510982, Length=437, Percent_Identity=29.0617848970252, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI87081980, Length=265, Percent_Identity=35.8490566037736, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI87081845, Length=256, Percent_Identity=33.59375, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=34.6774193548387, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI1788381, Length=421, Percent_Identity=28.0285035629454, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=31.5352697095436, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=32.5102880658436, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=31.7073170731707, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1787055, Length=410, Percent_Identity=26.0975609756098, Blast_Score=125, Evalue=8e-30,
Organism=Escherichia coli, GI1788849, Length=447, Percent_Identity=25.2796420581655, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=34.7560975609756, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=472, Percent_Identity=25, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=37.3493975903614, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=40.9090909090909, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=35.9550561797753, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=36.4705882352941, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=35.4651162790698, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=36.5384615384615, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787802, Length=238, Percent_Identity=30.2521008403361, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1789650, Length=442, Percent_Identity=20.8144796380091, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=34.1463414634146, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.7619047619048, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=109, Percent_Identity=38.5321100917431, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=259, Percent_Identity=25.8687258687259, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 85279; Mature: 85279

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIES
CCCCEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHH
QIRGYFRQTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVID
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHC
GLALKTADKNNLDALIWVFSNSVSGFILIIGLSLLAHASDDKPVRLVTFILLTTFLVLAA
CCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
IAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFY
HHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHH
MSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANGQRNNSSLALLLIDLDNFKAINDTF
CEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHH
GHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILNELNS
CCCCHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCC
PYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGYSQ
CEEECCEEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCH
HRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIPVA
HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCEEECC
ENTGLITELSQWVLQKSCIQIMHWASQYNKMLSFSINVSPVQLTNPQFPKILEKILQEYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCHHHHHHHHHHHHC
YPAEYLELEITENALMGDQDEISKMLNVISDLGIKLSLDDFGKEYSSLNRLKTLPIDSLK
CCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCEE
IDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQGFLL
CHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRL
CCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MDNSFVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIES
CCCCEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHH
QIRGYFRQTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVID
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHC
GLALKTADKNNLDALIWVFSNSVSGFILIIGLSLLAHASDDKPVRLVTFILLTTFLVLAA
CCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
IAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIYASYPTILSDSVFY
HHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHH
MSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANGQRNNSSLALLLIDLDNFKAINDTF
CEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHH
GHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSARHLAERILNELNS
CCCCHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCC
PYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKNTYQFYTEQLGYSQ
CEEECCEEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCH
HRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIPVA
HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCEEECC
ENTGLITELSQWVLQKSCIQIMHWASQYNKMLSFSINVSPVQLTNPQFPKILEKILQEYQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCHHHHHHHHHHHHC
YPAEYLELEITENALMGDQDEISKMLNVISDLGIKLSLDDFGKEYSSLNRLKTLPIDSLK
CCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCCEE
IDKTFISDIHNEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYLVSRKCHFGQGFLL
CHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRL
CCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]