Click here to switch to the map view.

The map label for this gene is phbC

Identifier: 52841292

GI number: 52841292

Start: 1156198

End: 1158000

Strand: Direct

Name: phbC

Synonym: lpg1058

Alternate gene names: 52841292

Gene position: 1156198-1158000 (Clockwise)

Preceding gene: 52841291

Following gene: 52841296

Centisome position: 34.03

GC content: 45.76

Gene sequence:

>1803_bases
ATGTCGGCCATGAAGGGACTAGAAAAACAATGCTGTCCTAAGAAAAGAATACTCACTCAGAGTCAAGAATTGCAAGAAGG
GGTAGATTTCTCGTGTTGTGCACCGGCTGATAGAGGTACTTCCGATAACTTCTTTCCATTTTTCACTCGATTAGTGCAAG
CCAACTTGGCTAAATGGACGGCAGGAATAAGTCCTGCTGCCATCGGTTCTTCTTATTCCACCTGGCTTTGGCAATTGGCC
CAATCCCCTGGGGTTTTGTGGGAACTTGCTTTTTATCCGGTTTTTCATGCCAAGGATTGCATTAATAATATCGTTTGTGT
TGAGCGTGCTGCGGATGGTAAAGACGTGCGTTTTAAAAAAGACAGTTGGCAGCCTATGCCTTGGCGTTTATTCGCCGAAG
GGTTTTTGCAGATGGAAGATTGGTGGCGACGCGCCACAACGGACGTGCCAGGATTACCCAACCAAGTGGAACGTACTGTT
TCATTCTGGGCGCGCCAATGCCTTGATGCCCTATCCCCTTCCAATTTTGTTTGGTCTAATCCTGATTTATTTCATGAAGC
CATGCGCACTGGGGGACTTAATCTCATCCAAGGCGGCCAAATCGCGCTCGAAGATTGGTTAGAAAAGCTAACCGGTGCAC
CACCTACAGGTTCTGAACATTTTATCCCAGGGAAACAAGTAGCTATTACTCCAGGGCGGGTGGTCTTTCAAAATCATTTA
ATTGAGCTCATTCAATATGAAGCCCAAACGAAAACAGTCTATAAAGAGCCGATACTTATCTTACCAGCCTGGATTATGAA
ATATTATATTCTCGATTTATCACCACATAACTCCTTGGTGAAGTGGCTCGTAAGTCAGGGACACACTGTATTTATCATTT
CTTGGCGCAATCCTGACAAAGAAGACCAGGATTTGGGGATGGATGATTATTATCGACAAGGCGCAATGGCTGCCATTGAT
GCGGTATCGACTCTTTTTCCAGAAACTAAAATCAATCTGATGGGGTATTGTTTAGGAGGTACCTTGGCTATGATTACGGC
AGCTGCGATGGGCAGAGACAAGGACGAGCGTTTAAACAGCTTGACACTCTTGGCAGCCCAAGGGGATTTTACTGAGGCTG
GGGAATTAATGCTCTTTGTAACTGAAAGTCAAGTGGATTTTCTTAAAAGTATGATGCGGGAACAAGGGTATCTGGATACC
AAGCAAATGGCTGGTTCTTTTCAGATGTTGCGTGCTTATGACTTAATTTGGTCCAAAATGGTTCAAGATTACATGCATGG
AATGCGGCGAGGGATGATTGATTTGACCGCTTGGAACGCAGATGCCACCCGGATGCCTTACAAAATGCACAGTGAATACC
TTGAAAAACTCTTCTTAAGGAATGATTTTGCCGAAGGGCGTTATACAGTGGAAGGAAAGCCTGTGGCTGCTGAGAATATT
AAGTTACCTGTTTTTGCGGTGAGCACTGAAAAAGACCATGTAGCACCCTGGCAATCCGTCTATAAAATCCATCTTATGAC
TGAAGGGGATGTGACCTTTGTTCTCACTGGTGGTGGGCATAATGCGGGCATCATCAGTGAGCCGGGTCACCCAGGACGCT
CTTATCGTGTTCATGAGCAGAAACAAGGCGAGGCTTACTTAAATCCTGAGAGCTGGCTTGCGATGGCAGAGAGGCGGGAA
GGTTCCTGGTGGCGAGAATGGAATGAGTGGCTAGTCCAGCAAAATACTAAAAAACGCATTGCATCATCGGTCATGAATCC
CTCACTGCCAGAGGCACCAGGAACTTATGTGCTTCAGAAATAA

Upstream 100 bases:

>100_bases
GGATAAGTTAATAAGCCCCGCTTTATTGACCAAAATCGATGGGTTAAATTTTGTGCTATGCTGTATTATATCGTGTTGAT
TATAGAGCATAATATCAGGG

Downstream 100 bases:

>100_bases
AACGCTCTTCTTTGAACAATAGGAGCGCTGTATATTAGTAAGCATCCGATCCAATAAAGCCGCATCCATTTGCTTAGCAA
ATCCTCTAGGTGGATGGCGG

Product: polyhydroxyalkanoic synthase

Products: NA

Alternate protein names: PHA polymerase; PHA synthase; Polyhydroxyalkanoic acid synthase [H]

Number of amino acids: Translated: 600; Mature: 599

Protein sequence:

>600_residues
MSAMKGLEKQCCPKKRILTQSQELQEGVDFSCCAPADRGTSDNFFPFFTRLVQANLAKWTAGISPAAIGSSYSTWLWQLA
QSPGVLWELAFYPVFHAKDCINNIVCVERAADGKDVRFKKDSWQPMPWRLFAEGFLQMEDWWRRATTDVPGLPNQVERTV
SFWARQCLDALSPSNFVWSNPDLFHEAMRTGGLNLIQGGQIALEDWLEKLTGAPPTGSEHFIPGKQVAITPGRVVFQNHL
IELIQYEAQTKTVYKEPILILPAWIMKYYILDLSPHNSLVKWLVSQGHTVFIISWRNPDKEDQDLGMDDYYRQGAMAAID
AVSTLFPETKINLMGYCLGGTLAMITAAAMGRDKDERLNSLTLLAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDT
KQMAGSFQMLRAYDLIWSKMVQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYTVEGKPVAAENI
KLPVFAVSTEKDHVAPWQSVYKIHLMTEGDVTFVLTGGGHNAGIISEPGHPGRSYRVHEQKQGEAYLNPESWLAMAERRE
GSWWREWNEWLVQQNTKKRIASSVMNPSLPEAPGTYVLQK

Sequences:

>Translated_600_residues
MSAMKGLEKQCCPKKRILTQSQELQEGVDFSCCAPADRGTSDNFFPFFTRLVQANLAKWTAGISPAAIGSSYSTWLWQLA
QSPGVLWELAFYPVFHAKDCINNIVCVERAADGKDVRFKKDSWQPMPWRLFAEGFLQMEDWWRRATTDVPGLPNQVERTV
SFWARQCLDALSPSNFVWSNPDLFHEAMRTGGLNLIQGGQIALEDWLEKLTGAPPTGSEHFIPGKQVAITPGRVVFQNHL
IELIQYEAQTKTVYKEPILILPAWIMKYYILDLSPHNSLVKWLVSQGHTVFIISWRNPDKEDQDLGMDDYYRQGAMAAID
AVSTLFPETKINLMGYCLGGTLAMITAAAMGRDKDERLNSLTLLAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDT
KQMAGSFQMLRAYDLIWSKMVQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYTVEGKPVAAENI
KLPVFAVSTEKDHVAPWQSVYKIHLMTEGDVTFVLTGGGHNAGIISEPGHPGRSYRVHEQKQGEAYLNPESWLAMAERRE
GSWWREWNEWLVQQNTKKRIASSVMNPSLPEAPGTYVLQK
>Mature_599_residues
SAMKGLEKQCCPKKRILTQSQELQEGVDFSCCAPADRGTSDNFFPFFTRLVQANLAKWTAGISPAAIGSSYSTWLWQLAQ
SPGVLWELAFYPVFHAKDCINNIVCVERAADGKDVRFKKDSWQPMPWRLFAEGFLQMEDWWRRATTDVPGLPNQVERTVS
FWARQCLDALSPSNFVWSNPDLFHEAMRTGGLNLIQGGQIALEDWLEKLTGAPPTGSEHFIPGKQVAITPGRVVFQNHLI
ELIQYEAQTKTVYKEPILILPAWIMKYYILDLSPHNSLVKWLVSQGHTVFIISWRNPDKEDQDLGMDDYYRQGAMAAIDA
VSTLFPETKINLMGYCLGGTLAMITAAAMGRDKDERLNSLTLLAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDTK
QMAGSFQMLRAYDLIWSKMVQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYTVEGKPVAAENIK
LPVFAVSTEKDHVAPWQSVYKIHLMTEGDVTFVLTGGGHNAGIISEPGHPGRSYRVHEQKQGEAYLNPESWLAMAERREG
SWWREWNEWLVQQNTKKRIASSVMNPSLPEAPGTYVLQK

Specific function: Unknown

COG id: COG3243

COG function: function code I; Poly(3-hydroxyalkanoate) synthetase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PHA/PHB synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010963
- InterPro:   IPR010941 [H]

Pfam domain/function: PF07167 PhaC_N [H]

EC number: NA

Molecular weight: Translated: 68150; Mature: 68018

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAMKGLEKQCCPKKRILTQSQELQEGVDFSCCAPADRGTSDNFFPFFTRLVQANLAKWT
CCHHHCCHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
AGISPAAIGSSYSTWLWQLAQSPGVLWELAFYPVFHAKDCINNIVCVERAADGKDVRFKK
CCCCHHHCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCEEEEEECCCCCCEEEEC
DSWQPMPWRLFAEGFLQMEDWWRRATTDVPGLPNQVERTVSFWARQCLDALSPSNFVWSN
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDLFHEAMRTGGLNLIQGGQIALEDWLEKLTGAPPTGSEHFIPGKQVAITPGRVVFQNHL
HHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHH
IELIQYEAQTKTVYKEPILILPAWIMKYYILDLSPHNSLVKWLVSQGHTVFIISWRNPDK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCEEEEEECCCCCC
EDQDLGMDDYYRQGAMAAIDAVSTLFPETKINLMGYCLGGTLAMITAAAMGRDKDERLNS
CCCCCCCHHHHHCCHHHHHHHHHHHCCCCCHHHEEEEHHHHHHHHHHHHHCCCHHHHHCE
LTLLAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDTKQMAGSFQMLRAYDLIWSKM
EEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYTVEGKPVAAENI
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCE
KLPVFAVSTEKDHVAPWQSVYKIHLMTEGDVTFVLTGGGHNAGIISEPGHPGRSYRVHEQ
EEEEEEEECCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEECCCC
KQGEAYLNPESWLAMAERREGSWWREWNEWLVQQNTKKRIASSVMNPSLPEAPGTYVLQK
CCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEECC
>Mature Secondary Structure 
SAMKGLEKQCCPKKRILTQSQELQEGVDFSCCAPADRGTSDNFFPFFTRLVQANLAKWT
CHHHCCHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
AGISPAAIGSSYSTWLWQLAQSPGVLWELAFYPVFHAKDCINNIVCVERAADGKDVRFKK
CCCCHHHCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCEEEEEECCCCCCEEEEC
DSWQPMPWRLFAEGFLQMEDWWRRATTDVPGLPNQVERTVSFWARQCLDALSPSNFVWSN
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDLFHEAMRTGGLNLIQGGQIALEDWLEKLTGAPPTGSEHFIPGKQVAITPGRVVFQNHL
HHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHH
IELIQYEAQTKTVYKEPILILPAWIMKYYILDLSPHNSLVKWLVSQGHTVFIISWRNPDK
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECCCCHHHHHHHHHCCCEEEEEECCCCCC
EDQDLGMDDYYRQGAMAAIDAVSTLFPETKINLMGYCLGGTLAMITAAAMGRDKDERLNS
CCCCCCCHHHHHCCHHHHHHHHHHHCCCCCHHHEEEEHHHHHHHHHHHHHCCCHHHHHCE
LTLLAAQGDFTEAGELMLFVTESQVDFLKSMMREQGYLDTKQMAGSFQMLRAYDLIWSKM
EEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VQDYMHGMRRGMIDLTAWNADATRMPYKMHSEYLEKLFLRNDFAEGRYTVEGKPVAAENI
HHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCE
KLPVFAVSTEKDHVAPWQSVYKIHLMTEGDVTFVLTGGGHNAGIISEPGHPGRSYRVHEQ
EEEEEEEECCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEECCCC
KQGEAYLNPESWLAMAERREGSWWREWNEWLVQQNTKKRIASSVMNPSLPEAPGTYVLQK
CCCCEEECHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7763712 [H]