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The map label for this gene is yciR [C]

Identifier: 52841291

GI number: 52841291

Start: 1154508

End: 1156028

Strand: Direct

Name: yciR [C]

Synonym: lpg1057

Alternate gene names: 52841291

Gene position: 1154508-1156028 (Clockwise)

Preceding gene: 52841290

Following gene: 52841292

Centisome position: 33.98

GC content: 39.12

Gene sequence:

>1521_bases
ATGATCATTGTCGTTTGGAGATTACCTTTGAGTGATGAGAACAAAGCATTATTTGAGCGCTCTTATTATCGCGAAAGAAA
AGCTCGCGAGGAAGCCGAATTATTGCTGGAAAATAAGACAAGGGAACTTCATTTACTGAACCAGGATTTGGAAAAAAAGA
ATGCTGAACTGCTAAAAACGCTAAAAGACTTAGAAAGCGTACAAAAGAAATTATCGAAATTAGCCCATTTTGATGTATTA
AGCCGATTACCCAATCGATTGCAGTTTGAACTGGATTTAAAACGTGAGATTGCTAGGTCAAAAAGATACGGTCGTCATCT
GGCTCTGTTAAGCATCGATTTGGATTTTTTTAAAAATGTGAATGATCGCTTTGGTCATGATGTCGGTGATGGTCTATTGC
GTGAAGTAGCGAAGCGTCTTTGCTCCAGTCTTCGCGAAGAAGATTGTGTGGCTCGATTGGGAGGAGATGAGTTTGCAGTG
ATTCTGACAGAAATTAATAATCCACAACAGGCAAAATTAGTGGCCAATAATATGATTCAAAAGATGGGTCAACCATTCCT
TATTAAAGGCCATACCGTCATGATTGGACTAAGTATAGGAATTGCTTACTTTCCTGATGCCGGTGATGAGGCAATAACTC
TTCGTAAGAATGCCGATATTGCTTTATACAACGCCAAAGAATGTGGTCGAAATAATTGCCAAATCTTCACACCGTCTCTT
AGAAAACAATATTCAAAACGCTTGGGAATAGGAACCGAGTTGCATCTTGCTTTGGAGCGACAAGAATTTTTTCTTGTTTA
TCAGCCCCGGGTTGACTTAAAAACGAATTCTATGGTTGGAATGGAGGTCTTATTACGTTGGCAACATCCCAAGCGGGGCG
TTGTTTTTCCTGATGAATTCATTTCCGTTGCAGAGCATTTTAACTTGATTATTCCAATTGGTGAATGGGTCTTACGAACC
GCGTGTAGGCAGTATGTGGATTGGAAAAAGAGTTACGCTCCTTTCAACTGCACCCTGGCGATTAATATTTCGCTTCATCA
ATTTCAACACAAAGGGTTTATTTCTTCTGTGAAGCACATTTTACAAGAATATCAAATGCCATCGGATTGGTTAGAGCTTG
AAATTACGGAAGCAACGGCAGTCAATTTTTTGGGAAAGATTGAAGATACATTAAGTACGCTTCGCAATATGGGGGTAAAG
CTTGCTTTTGATAATTTTGGCTCAGGCTATTCTTTTTTATCTCACTTAAAAAATTCACCAGTCCAATCCATCAAACTGAA
ACAAACCTTAATTGAAGATGCTCATCTCAGAGAAAATGATAATTTAATTATCAAATCGACGATTGCTTTGTCGAAAGAGT
TAGGATTGAATGTGGTTGTGGGTGGTGTCGAAACAGAAGAACAACTCAATTTTTTACGGTCAAGTCACTGTTTCGAAGTG
CAAGGCTATTACAGCAGTAAACCGTTAACAGTAGGACAGATGACGCAATTTATCGAGGAAAGGAACTCCAAAGGGCTGTA
G

Upstream 100 bases:

>100_bases
AGAAGACTCTGTCATTTTGCAATGGGGCTCATCCAGGGAGCAGCGCAACATTTTAAAAAGAAAATTACCATTAAGCAGAC
TCACTGCATGTTAAAAAAAG

Downstream 100 bases:

>100_bases
CTTTATGTTGTTTCATTCCTATCAAAAAATAACACCAATTAGGTTACCAAAAATAATTTAGCCTAAAATGGATAAGTTAA
TAAGCCCCGCTTTATTGACC

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MIIVVWRLPLSDENKALFERSYYRERKAREEAELLLENKTRELHLLNQDLEKKNAELLKTLKDLESVQKKLSKLAHFDVL
SRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNVNDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAV
ILTEINNPQQAKLVANNMIQKMGQPFLIKGHTVMIGLSIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFTPSL
RKQYSKRLGIGTELHLALERQEFFLVYQPRVDLKTNSMVGMEVLLRWQHPKRGVVFPDEFISVAEHFNLIIPIGEWVLRT
ACRQYVDWKKSYAPFNCTLAINISLHQFQHKGFISSVKHILQEYQMPSDWLELEITEATAVNFLGKIEDTLSTLRNMGVK
LAFDNFGSGYSFLSHLKNSPVQSIKLKQTLIEDAHLRENDNLIIKSTIALSKELGLNVVVGGVETEEQLNFLRSSHCFEV
QGYYSSKPLTVGQMTQFIEERNSKGL

Sequences:

>Translated_506_residues
MIIVVWRLPLSDENKALFERSYYRERKAREEAELLLENKTRELHLLNQDLEKKNAELLKTLKDLESVQKKLSKLAHFDVL
SRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNVNDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAV
ILTEINNPQQAKLVANNMIQKMGQPFLIKGHTVMIGLSIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFTPSL
RKQYSKRLGIGTELHLALERQEFFLVYQPRVDLKTNSMVGMEVLLRWQHPKRGVVFPDEFISVAEHFNLIIPIGEWVLRT
ACRQYVDWKKSYAPFNCTLAINISLHQFQHKGFISSVKHILQEYQMPSDWLELEITEATAVNFLGKIEDTLSTLRNMGVK
LAFDNFGSGYSFLSHLKNSPVQSIKLKQTLIEDAHLRENDNLIIKSTIALSKELGLNVVVGGVETEEQLNFLRSSHCFEV
QGYYSSKPLTVGQMTQFIEERNSKGL
>Mature_506_residues
MIIVVWRLPLSDENKALFERSYYRERKAREEAELLLENKTRELHLLNQDLEKKNAELLKTLKDLESVQKKLSKLAHFDVL
SRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNVNDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAV
ILTEINNPQQAKLVANNMIQKMGQPFLIKGHTVMIGLSIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFTPSL
RKQYSKRLGIGTELHLALERQEFFLVYQPRVDLKTNSMVGMEVLLRWQHPKRGVVFPDEFISVAEHFNLIIPIGEWVLRT
ACRQYVDWKKSYAPFNCTLAINISLHQFQHKGFISSVKHILQEYQMPSDWLELEITEATAVNFLGKIEDTLSTLRNMGVK
LAFDNFGSGYSFLSHLKNSPVQSIKLKQTLIEDAHLRENDNLIIKSTIALSKELGLNVVVGGVETEEQLNFLRSSHCFEV
QGYYSSKPLTVGQMTQFIEERNSKGL

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=33.0985915492958, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=29.5871559633028, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI226510982, Length=416, Percent_Identity=28.6057692307692, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=30.3149606299213, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=29.4573643410853, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=30.5439330543933, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=29.3877551020408, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788381, Length=231, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=29.1828793774319, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=28.8065843621399, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=38.7878787878788, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=32.0224719101124, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1788849, Length=428, Percent_Identity=23.5981308411215, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=177, Percent_Identity=34.4632768361582, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=27.4678111587983, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=31.0734463276836, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=33.1288343558282, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788956, Length=180, Percent_Identity=35, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=32.1637426900585, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=35.8823529411765, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081977, Length=180, Percent_Identity=29.4444444444444, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=32.3529411764706, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=20.9026128266033, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 58057; Mature: 58057

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS00063 ALDOKETO_REDUCTASE_3 ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVVWRLPLSDENKALFERSYYRERKAREEAELLLENKTRELHLLNQDLEKKNAELLKT
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LKDLESVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCEEEEEEEEHHHHHCC
NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHH
KMGQPFLIKGHTVMIGLSIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFTPSL
HCCCCEEEECCEEEEEEEECEEECCCCCCCEEEEECCCCEEEEEHHHCCCCCCEEECHHH
RKQYSKRLGIGTELHLALERQEFFLVYQPRVDLKTNSMVGMEVLLRWQHPKRGVVFPDEF
HHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHEECCCCCCCCCCHHH
ISVAEHFNLIIPIGEWVLRTACRQYVDWKKSYAPFNCTLAINISLHQFQHKGFISSVKHI
HHHHHHCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHCCHHHHHHHH
LQEYQMPSDWLELEITEATAVNFLGKIEDTLSTLRNMGVKLAFDNFGSGYSFLSHLKNSP
HHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCC
VQSIKLKQTLIEDAHLRENDNLIIKSTIALSKELGLNVVVGGVETEEQLNFLRSSHCFEV
HHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEE
QGYYSSKPLTVGQMTQFIEERNSKGL
ECEECCCCEEHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIIVVWRLPLSDENKALFERSYYRERKAREEAELLLENKTRELHLLNQDLEKKNAELLKT
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LKDLESVQKKLSKLAHFDVLSRLPNRLQFELDLKREIARSKRYGRHLALLSIDLDFFKNV
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCEEEEEEEEHHHHHCC
NDRFGHDVGDGLLREVAKRLCSSLREEDCVARLGGDEFAVILTEINNPQQAKLVANNMIQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHH
KMGQPFLIKGHTVMIGLSIGIAYFPDAGDEAITLRKNADIALYNAKECGRNNCQIFTPSL
HCCCCEEEECCEEEEEEEECEEECCCCCCCEEEEECCCCEEEEEHHHCCCCCCEEECHHH
RKQYSKRLGIGTELHLALERQEFFLVYQPRVDLKTNSMVGMEVLLRWQHPKRGVVFPDEF
HHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHEECCCCCCCCCCHHH
ISVAEHFNLIIPIGEWVLRTACRQYVDWKKSYAPFNCTLAINISLHQFQHKGFISSVKHI
HHHHHHCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHHHHCCHHHHHHHH
LQEYQMPSDWLELEITEATAVNFLGKIEDTLSTLRNMGVKLAFDNFGSGYSFLSHLKNSP
HHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCC
VQSIKLKQTLIEDAHLRENDNLIIKSTIALSKELGLNVVVGGVETEEQLNFLRSSHCFEV
HHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEE
QGYYSSKPLTVGQMTQFIEERNSKGL
ECEECCCCEEHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]