Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 52841061

GI number: 52841061

Start: 903183

End: 904097

Strand: Reverse

Name: yebA [H]

Synonym: lpg0825

Alternate gene names: 52841061

Gene position: 904097-903183 (Counterclockwise)

Preceding gene: 52841062

Following gene: 52841060

Centisome position: 26.61

GC content: 38.91

Gene sequence:

>915_bases
TTGACTAAAATCATGAAGAATCTATTACATTCACTTGCCTGTCTATTGATATTAATAAGCTCAGCAAAACTATCCTATGG
TCTGGCTCTACCAGAAAATCATTCTGTCAATGGGGGACTGACTATTATTCCAATTGATTTCAATCAGAAGCCTGAAGCCT
ATTTCGAGGGGAAACGCATCCCGGTTCTTCCCAGTACCCAACCCCGGCAATGGTTATTAATCGTTGCAATCCCGCTTAAA
AATACCAACTCTGTTCAATACATCAACGTGACAAAACCCATCAAAGCATCTATTCCCTTTCATGTTAGTGAAAAATTTTA
CAGTACCCAATTTTTAAATATAAAAGATATCAGTAAAGTGGATCCTCAACCCGAAGATTTAATCCGTATTGAAAAAGAAA
CCAAAAAATTAACCCAAATTTTTGCTAATTACTCCAATACCAATCCATTTGAGAAACAATTCACAGCACCACTGAGAGGA
CCTATAACCAGTTTATTTGGCCTGAAGAGAGTTTATAATAAACAGCCAAGAGATCCGCATTCTGGATTGGACATCGCCGC
TGACGAGGGGAAACCTGTGTATGCTGTAAATCAGGGAGTTGTAGCAGATACCGGTGATTATTTTTTCACAGGCAATACGG
TTATCCTTGATCATGGCATGGGAGTATTCTCGGTTTATGCTCATCTTAGCAAAATTCTGGTTAAAACAGGAGAAACAATC
AAACAAGGCCAAGAGCTTGGATTAGTTGGTATGACAGGAAGAGTAACAGGCCCCCATCTCCACTGGACTATGGTAGTTAA
CCAAACTTTGGTTGAGCCTTTACTTTTTGTGCCGTTTCGCAAAATCACAGTTACACCAGTTATACCAGATAAAAAATCAA
ACAAATCAACACAAGATGCAACGGCAAAATCATGA

Upstream 100 bases:

>100_bases
AAAGAATACTCTTTGCTGCCCAACAGGCACAAATTGGAGATACTATCGATGTCCGTTTAGCAAAAGGAAGTCTTGCTTGT
GAGGTTACTCAAATTAAGGA

Downstream 100 bases:

>100_bases
TTAACGAATTAACGACCAGTTTGAATGTGATTGTCACCCAGACACAAAATAACCTGAAAATTTTGGGAGTAATACTACTA
ATTCCCTGGTCAATATTTTT

Product: M24/M37 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTKIMKNLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLK
NTNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRG
PITSLFGLKRVYNKQPRDPHSGLDIAADEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETI
KQGQELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDATAKS

Sequences:

>Translated_304_residues
MTKIMKNLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLK
NTNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRG
PITSLFGLKRVYNKQPRDPHSGLDIAADEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETI
KQGQELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDATAKS
>Mature_303_residues
TKIMKNLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLKN
TNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRGP
ITSLFGLKRVYNKQPRDPHSGLDIAADEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETIK
QGQELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDATAKS

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=43.75, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33766; Mature: 33634

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIMKNLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRI
CHHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEEECCCCCCHHHCCCCCC
PVLPSTQPRQWLLIVAIPLKNTNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKV
CCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEECCHHHCEEECCHHHHHHC
DPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRGPITSLFGLKRVYNKQPRDPH
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
SGLDIAADEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETI
CCCEEEECCCCEEEEECCCEEEECCCEEEECCEEEEECCCHHHHHHHHHHHHHHHCCHHH
KQGQELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDA
HCCCCCCEEEECCCCCCCCEEEEEEHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
TAKS
CCCC
>Mature Secondary Structure 
TKIMKNLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDFNQKPEAYFEGKRI
HHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEEECCCCCCHHHCCCCCC
PVLPSTQPRQWLLIVAIPLKNTNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKV
CCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEECCHHHCEEECCHHHHHHC
DPQPEDLIRIEKETKKLTQIFANYSNTNPFEKQFTAPLRGPITSLFGLKRVYNKQPRDPH
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
SGLDIAADEGKPVYAVNQGVVADTGDYFFTGNTVILDHGMGVFSVYAHLSKILVKTGETI
CCCEEEECCCCEEEEECCCEEEECCCEEEECCEEEEECCCHHHHHHHHHHHHHHHCCHHH
KQGQELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVIPDKKSNKSTQDA
HCCCCCCEEEECCCCCCCCEEEEEEHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
TAKS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]