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The map label for this gene is rpe

Identifier: 52840901

GI number: 52840901

Start: 715277

End: 715930

Strand: Reverse

Name: rpe

Synonym: lpg0664

Alternate gene names: 52840901

Gene position: 715930-715277 (Counterclockwise)

Preceding gene: 52840902

Following gene: 52840900

Centisome position: 21.07

GC content: 41.9

Gene sequence:

>654_bases
ATGACATTCCAAATTTTACCCTCTTTACTGTCAGCGGACGTGACCCGTTTAGGAGAGGAAGTAGATACCGTTATGAAAGC
CGGCGCTGATTTTATTCATTTTGATGTCATGGATAACCATTATGTACCCAACCTGACCTTTGGCCCCGCTTTCTGTGACG
CTTTAATCAAAAAATTTCCAAATTTGCCGATTGATGTCCATTTGATGACCACCCCGGTTGATACTCTAATCGAAGCATTT
GCCAAAGCAGGTGCGAAACGTATCAGTATTCATCCAGATGCTACTATTCATTTAGACAGGAGTTTGCAGTTAATCAATAA
CCTTGGATGTGAAGCGGGTTTAGTGCTCAACCCAGCTACGTCAATCGACACATTAACCTGGTGTGCCCATAATCTAAAAT
TTGTTTTGGTCATGACAGTTAACCCAGGATTTGGCGGTCAAAAACTTATCCCGGAGGTTATACCCAAGCTCTCTAAAATT
CGGCAGCAGCACCCAAATCTCGATCTTTGTGTTGATGGTGGAGTCACACCCCAGAATATTGCTTCATTAGCACATGCCGG
AGCTAACCAATTTGTTGCAGGTTCTGCTATATTCAATAGCAGTAATTATAGTGAAACCATTAAACGTATGCGTGAACAAT
TAGCAAGCATTTAA

Upstream 100 bases:

>100_bases
TTAAATCAATAAAACTCGATATGAATCCAAATCGTAATGCTGGAATGTTTACCAAAGTCAGCTTATTATATGTAAAAGCA
AACCGTTGAATTACTAAATC

Downstream 100 bases:

>100_bases
AAGTGCCAAATAATTGCCCTCAAGCCTTATTAAGAGGAATTATGAAAAGATTATTAATTTTTTTATGTGGGCTTCTCTGT
TCTTTCAACTTGTTTGCTTT

Product: D-ribulose-5-phosphate-3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTFQILPSLLSADVTRLGEEVDTVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAF
AKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKI
RQQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKRMREQLASI

Sequences:

>Translated_217_residues
MTFQILPSLLSADVTRLGEEVDTVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAF
AKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKI
RQQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKRMREQLASI
>Mature_216_residues
TFQILPSLLSADVTRLGEEVDTVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAFA
KAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIR
QQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKRMREQLASI

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=209, Percent_Identity=39.7129186602871, Blast_Score=163, Evalue=9e-41,
Organism=Homo sapiens, GI219879828, Length=209, Percent_Identity=37.3205741626794, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI24307923, Length=164, Percent_Identity=34.1463414634146, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=50.6849315068493, Blast_Score=226, Evalue=6e-61,
Organism=Escherichia coli, GI1790523, Length=220, Percent_Identity=35, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1790754, Length=204, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17552948, Length=211, Percent_Identity=40.2843601895735, Blast_Score=164, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=37.0535714285714, Blast_Score=157, Evalue=8e-40,
Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=37.5586854460094, Blast_Score=157, Evalue=6e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23587; Mature: 23455

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFQILPSLLSADVTRLGEEVDTVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFP
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
NLPIDVHLMTTPVDTLIEAFAKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPAT
CCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHCCCCCCEEECCCC
SIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIRQQHPNLDLCVDGGVTPQNI
CHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
ASLAHAGANQFVAGSAIFNSSNYSETIKRMREQLASI
HHHHHCCCCCEEECHHEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFQILPSLLSADVTRLGEEVDTVMKAGADFIHFDVMDNHYVPNLTFGPAFCDALIKKFP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
NLPIDVHLMTTPVDTLIEAFAKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPAT
CCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHCCCCCCEEECCCC
SIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIRQQHPNLDLCVDGGVTPQNI
CHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
ASLAHAGANQFVAGSAIFNSSNYSETIKRMREQLASI
HHHHHCCCCCEEECHHEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]