Click here to switch to the map view.

The map label for this gene is yrdA

Identifier: 52840814

GI number: 52840814

Start: 613387

End: 613923

Strand: Reverse

Name: yrdA

Synonym: lpg0577

Alternate gene names: 52840814

Gene position: 613923-613387 (Counterclockwise)

Preceding gene: 52840815

Following gene: 52840813

Centisome position: 18.07

GC content: 39.85

Gene sequence:

>537_bases
ATGAACTATTCCATTCGTAAATTTGAAGACAAGTATCCTGAATTAGGTGAACGAGTTTATATTGATCCGCAATCCACTGT
CATTGGTAACGTAACCCTGGGAGATGACGTATCCGTATGGCCTATGGCTGTTATTCGTGGTGATGTCAATTATATTCAAA
TAGGCCATTCCTGCAGTATTCAAGACGGTGCTGTGCTGCATGTTACTCATGATGGTCCTTATACTCCAGGCGGTAGGCCA
TTAATTTTAGGGCAAGGAATCACGGTAGGGCACAAAGCTCTATTACACGCCTGCACTATCAATGATTACTGTTTAATTGG
CATGGGATCTATAATTTTAGACTCAGCGCACATACAAAAACATGTCATGATTGCTGCAGGAAGCATTGTACCTCCGGGAA
AAATACTCCAAAGTGGATATTTGTATTTGGGAAGCCCGGTTCAAGCCGTCAGAAAATTAACTGCAAAAGAGATAGAACAA
ATTGAATATTCTGCAGGGCATTATATAAGGTTAAAGAATAAGTATCTTACATATTAG

Upstream 100 bases:

>100_bases
GGTTGCCATAAAAATGGGCGCATGTAAAAAGGACTTCGATAATACAATTGCAATTCATCCAACCAGTGCTGAAGAATTTG
TAACTATGGTGTAAATATAC

Downstream 100 bases:

>100_bases
GTTACGAGCTACTCATTTTTCTTATCCACATATTACTTTTGATAAATTAAAAAAAGAAATCAAGCCATTTAAACTCAACT
TATGACTTAAAGAGCCAGTG

Product: transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSIQDGAVLHVTHDGPYTPGGRP
LILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQKHVMIAAGSIVPPGKILQSGYLYLGSPVQAVRKLTAKEIEQ
IEYSAGHYIRLKNKYLTY

Sequences:

>Translated_178_residues
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSIQDGAVLHVTHDGPYTPGGRP
LILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQKHVMIAAGSIVPPGKILQSGYLYLGSPVQAVRKLTAKEIEQ
IEYSAGHYIRLKNKYLTY
>Mature_178_residues
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSIQDGAVLHVTHDGPYTPGGRP
LILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQKHVMIAAGSIVPPGKILQSGYLYLGSPVQAVRKLTAKEIEQ
IEYSAGHYIRLKNKYLTY

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=176, Percent_Identity=53.4090909090909, Blast_Score=205, Evalue=1e-54,
Organism=Escherichia coli, GI1787667, Length=146, Percent_Identity=31.5068493150685, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI87081681, Length=167, Percent_Identity=31.7365269461078, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19522; Mature: 19522

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSI
CCCCCCHHCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCEEEECCCCCC
QDGAVLHVTHDGPYTPGGRPLILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQK
CCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHEEEECCCCEEEEECCHHHEECHHHHE
HVMIAAGSIVPPGKILQSGYLYLGSPVQAVRKLTAKEIEQIEYSAGHYIRLKNKYLTY
EEEEEECCCCCCHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECEECCC
>Mature Secondary Structure
MNYSIRKFEDKYPELGERVYIDPQSTVIGNVTLGDDVSVWPMAVIRGDVNYIQIGHSCSI
CCCCCCHHCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCEEEECCCCCC
QDGAVLHVTHDGPYTPGGRPLILGQGITVGHKALLHACTINDYCLIGMGSIILDSAHIQK
CCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHEEEECCCCEEEEECCHHHEECHHHHE
HVMIAAGSIVPPGKILQSGYLYLGSPVQAVRKLTAKEIEQIEYSAGHYIRLKNKYLTY
EEEEEECCCCCCHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]