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The map label for this gene is rimM

Identifier: 52840642

GI number: 52840642

Start: 437723

End: 438232

Strand: Reverse

Name: rimM

Synonym: lpg0397

Alternate gene names: 52840642

Gene position: 438232-437723 (Counterclockwise)

Preceding gene: 52840644

Following gene: 52840641

Centisome position: 12.9

GC content: 39.61

Gene sequence:

>510_bases
GTGAATAACAAGACAAATTGGGTTATCATCGGCCGTTTTGGCCGACCCCATGGTATTAAAGGCTTTGTCACGGTACATTC
CTTCACAGACCCTGCTGATAATATCTTGCGGTACAATGACTGGCACGTTTTTTTAAATAAACAGTGGCAGCCCCTTAAGT
TATTGACAATAGAAGTAAGAAGTAAAGCGATTATTGCTCAAATTGAAGGGTACCCGAAGCGTGAATTAGTCTCTGCATTA
ACCAATTTAGATATTGGTGTGCAAGAATCACAGCTTGCAGCTTTGGCACCAGGTGAGTATTACTGGTATCAACTGATTGG
CATGAGTGTCATAAACTCCAAAGGCGATCTTTTTGGAAAAGTTGTTGAAATCATGCCTACTGGCTCGAATGATGTACTTG
TTGTGGAAGGTGAAAAAAGACATTTAATTCCCTATCTTCCAGGACAATTTGTAATCAATGTTGATGAAAGCCAGCAAGTA
ATCACTGTTGATTGGGATATGAATTTTTAG

Upstream 100 bases:

>100_bases
AAATGACCCACTGGCAAAAAGTTGGGGCCCAGTTATCTGATCGAGTCAGTGCCTTGTTAAAAGAACATAGCAAAAAATCA
GAGACAGCTGCTTAACCAAA

Downstream 100 bases:

>100_bases
TGGCATTACATCTTGGAGTCATCACCCTGTTGCCTGAAATAATACAAGGCATCCATTATGGGGTAACCGGCCGAGCTATT
GAACAAGGCTTGGTTAAAAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVRSKAIIAQIEGYPKRELVSAL
TNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGKVVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINVDESQQV
ITVDWDMNF

Sequences:

>Translated_169_residues
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVRSKAIIAQIEGYPKRELVSAL
TNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGKVVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINVDESQQV
ITVDWDMNF
>Mature_169_residues
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVRSKAIIAQIEGYPKRELVSAL
TNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGKVVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINVDESQQV
ITVDWDMNF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=37.8698224852071, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19229; Mature: 19229

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVR
CCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHCEEECCEEEEECCCCCCEEEEEEEEC
SKAIIAQIEGYPKRELVSALTNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGK
CEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEEHHEECCCCCCCEE
VVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINVDESQQVITVDWDMNF
EEEEEECCCCCEEEEECCCCEEEEECCCEEEEEECCCCEEEEEEEECCC
>Mature Secondary Structure
MNNKTNWVIIGRFGRPHGIKGFVTVHSFTDPADNILRYNDWHVFLNKQWQPLKLLTIEVR
CCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHCEEECCEEEEECCCCCCEEEEEEEEC
SKAIIAQIEGYPKRELVSALTNLDIGVQESQLAALAPGEYYWYQLIGMSVINSKGDLFGK
CEEEEEEECCCCHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEEEHHEECCCCCCCEE
VVEIMPTGSNDVLVVEGEKRHLIPYLPGQFVINVDESQQVITVDWDMNF
EEEEEECCCCCEEEEECCCCEEEEECCCEEEEEECCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA