| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is yahD [C]
Identifier: 39998524
GI number: 39998524
Start: 3780275
End: 3780700
Strand: Reverse
Name: yahD [C]
Synonym: GSU3435
Alternate gene names: 39998524
Gene position: 3780700-3780275 (Counterclockwise)
Preceding gene: 39998525
Following gene: 39998523
Centisome position: 99.12
GC content: 64.32
Gene sequence:
>426_bases ATGGTTGAGAACGTGAATACCAAGGACAAGCACGGGCATACGCCGCTCATCGACGCGGCGAAGGCAGGGGATGTGGATGC GATCAGGGATCTCATCGGCCGTGGCGCCGACCTGGAGGCCAAAAGCGAGAAGGGCAAGACCGCCCTCCACTACGCGGCGG CCAACGGTCAGGCTGCAGCCATCCGGGCGCTGCTTGAGGCGGGCGCGCAGGTGGACCCGCGGGATCTCGAATGGCACACC CCCCTCATGCTGGCTGCGAATTACGGATGCAACGAATGCGTGGAAGACCTGCTGACGGCCGGCGCCGACCCCCTGGCCAA GATGAAGCTGGGCAATACGGCCCTGACCTATGCGGAAGCGAACGGACACCCTGACACTCTGGACCTGATCAAAAAGGCGC AACGGGCCAAGTCGGGCACCGCCTGA
Upstream 100 bases:
>100_bases TTCGCACCACGCACAACCGCATCACGGTCTGACACACGCACACTGGTCATCGTTCCGCAGAAGAGAATCCAACACGCAAC GAAGCAAAGGAGGACGTGTC
Downstream 100 bases:
>100_bases CCGCCGCGTGAACCGGTGGAGGGGCTCTGGCCGGAGCCCCTCCACTCCCGTGAACCATGCCGATACTGACCGATTTCAAA GCCATCGCCACCGGGCTTTT
Product: ankyrin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 141; Mature: 141
Protein sequence:
>141_residues MVENVNTKDKHGHTPLIDAAKAGDVDAIRDLIGRGADLEAKSEKGKTALHYAAANGQAAAIRALLEAGAQVDPRDLEWHT PLMLAANYGCNECVEDLLTAGADPLAKMKLGNTALTYAEANGHPDTLDLIKKAQRAKSGTA
Sequences:
>Translated_141_residues MVENVNTKDKHGHTPLIDAAKAGDVDAIRDLIGRGADLEAKSEKGKTALHYAAANGQAAAIRALLEAGAQVDPRDLEWHT PLMLAANYGCNECVEDLLTAGADPLAKMKLGNTALTYAEANGHPDTLDLIKKAQRAKSGTA >Mature_141_residues MVENVNTKDKHGHTPLIDAAKAGDVDAIRDLIGRGADLEAKSEKGKTALHYAAANGQAAAIRALLEAGAQVDPRDLEWHT PLMLAANYGCNECVEDLLTAGADPLAKMKLGNTALTYAEANGHPDTLDLIKKAQRAKSGTA
Specific function: Unknown
COG id: COG0666
COG function: function code R; FOG: Ankyrin repeat
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 8 ANK repeats [H]
Homologues:
Organism=Homo sapiens, GI70995267, Length=143, Percent_Identity=37.0629370629371, Blast_Score=84, Evalue=5e-17, Organism=Homo sapiens, GI38683807, Length=130, Percent_Identity=39.2307692307692, Blast_Score=77, Evalue=6e-15, Organism=Homo sapiens, GI38683816, Length=130, Percent_Identity=39.2307692307692, Blast_Score=77, Evalue=7e-15, Organism=Homo sapiens, GI46519151, Length=131, Percent_Identity=37.4045801526718, Blast_Score=74, Evalue=3e-14, Organism=Homo sapiens, GI46519154, Length=131, Percent_Identity=37.4045801526718, Blast_Score=74, Evalue=4e-14, Organism=Homo sapiens, GI68131557, Length=128, Percent_Identity=37.5, Blast_Score=74, Evalue=4e-14, Organism=Homo sapiens, GI46519147, Length=131, Percent_Identity=37.4045801526718, Blast_Score=74, Evalue=5e-14, Organism=Homo sapiens, GI37620163, Length=131, Percent_Identity=37.4045801526718, Blast_Score=73, Evalue=6e-14, Organism=Homo sapiens, GI32967601, Length=114, Percent_Identity=38.5964912280702, Blast_Score=73, Evalue=9e-14, Organism=Homo sapiens, GI52426735, Length=120, Percent_Identity=35, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI24233530, Length=128, Percent_Identity=36.71875, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI52426737, Length=120, Percent_Identity=35, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI188595682, Length=120, Percent_Identity=35, Blast_Score=71, Evalue=2e-13, Organism=Homo sapiens, GI55741641, Length=119, Percent_Identity=34.453781512605, Blast_Score=71, Evalue=2e-13, Organism=Homo sapiens, GI157743284, Length=155, Percent_Identity=34.8387096774194, Blast_Score=71, Evalue=4e-13, Organism=Homo sapiens, GI224809478, Length=131, Percent_Identity=38.1679389312977, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI224809472, Length=131, Percent_Identity=38.1679389312977, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI224809470, Length=131, Percent_Identity=38.1679389312977, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI224809468, Length=131, Percent_Identity=38.1679389312977, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI224809474, Length=131, Percent_Identity=38.1679389312977, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI224809476, Length=131, Percent_Identity=38.1679389312977, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI55742857, Length=121, Percent_Identity=37.1900826446281, Blast_Score=70, Evalue=4e-13, Organism=Homo sapiens, GI92087060, Length=140, Percent_Identity=35.7142857142857, Blast_Score=70, Evalue=7e-13, Organism=Homo sapiens, GI304361760, Length=122, Percent_Identity=36.0655737704918, Blast_Score=70, Evalue=7e-13, Organism=Homo sapiens, GI304361757, Length=122, Percent_Identity=36.0655737704918, Blast_Score=70, Evalue=7e-13, Organism=Homo sapiens, GI157739945, Length=99, Percent_Identity=39.3939393939394, Blast_Score=69, Evalue=1e-12, Organism=Homo sapiens, GI34304379, Length=133, Percent_Identity=34.5864661654135, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI225543463, Length=99, Percent_Identity=40.4040404040404, Blast_Score=68, Evalue=2e-12, Organism=Homo sapiens, GI34304381, Length=133, Percent_Identity=34.5864661654135, Blast_Score=68, Evalue=2e-12, Organism=Homo sapiens, GI56676397, Length=118, Percent_Identity=38.9830508474576, Blast_Score=68, Evalue=3e-12, Organism=Homo sapiens, GI55770876, Length=129, Percent_Identity=39.5348837209302, Blast_Score=68, Evalue=3e-12, Organism=Homo sapiens, GI225543461, Length=99, Percent_Identity=40.4040404040404, Blast_Score=68, Evalue=3e-12, Organism=Homo sapiens, GI268607595, Length=126, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI62988328, Length=126, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI156142199, Length=111, Percent_Identity=36.036036036036, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI156142197, Length=111, Percent_Identity=36.036036036036, Blast_Score=67, Evalue=5e-12, Organism=Homo sapiens, GI89363047, Length=128, Percent_Identity=36.71875, Blast_Score=67, Evalue=5e-12, Organism=Homo sapiens, GI56550047, Length=125, Percent_Identity=36.8, Blast_Score=66, Evalue=1e-11, Organism=Homo sapiens, GI13376842, Length=132, Percent_Identity=37.8787878787879, Blast_Score=66, Evalue=1e-11, Organism=Homo sapiens, GI59850762, Length=125, Percent_Identity=36.8, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI224465233, Length=128, Percent_Identity=36.71875, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI87239981, Length=131, Percent_Identity=38.1679389312977, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI300796386, Length=166, Percent_Identity=31.9277108433735, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI267844887, Length=127, Percent_Identity=34.6456692913386, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI38569428, Length=128, Percent_Identity=32.03125, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI38569426, Length=128, Percent_Identity=32.03125, Blast_Score=65, Evalue=3e-11, Organism=Homo sapiens, GI41327754, Length=123, Percent_Identity=34.9593495934959, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI70780355, Length=124, Percent_Identity=34.6774193548387, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI215598574, Length=124, Percent_Identity=34.6774193548387, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI70780357, Length=124, Percent_Identity=34.6774193548387, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI70780353, Length=124, Percent_Identity=34.6774193548387, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI70780359, Length=124, Percent_Identity=34.6774193548387, Blast_Score=64, Evalue=5e-11, Organism=Homo sapiens, GI20270347, Length=130, Percent_Identity=35.3846153846154, Blast_Score=64, Evalue=5e-11, Organism=Homo sapiens, GI134948558, Length=116, Percent_Identity=35.3448275862069, Blast_Score=63, Evalue=7e-11, Organism=Homo sapiens, GI134948605, Length=116, Percent_Identity=35.3448275862069, Blast_Score=63, Evalue=8e-11, Organism=Homo sapiens, GI12746412, Length=130, Percent_Identity=32.3076923076923, Blast_Score=63, Evalue=8e-11, Organism=Caenorhabditis elegans, GI25145251, Length=120, Percent_Identity=36.6666666666667, Blast_Score=72, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71981389, Length=120, Percent_Identity=36.6666666666667, Blast_Score=72, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17542700, Length=120, Percent_Identity=36.6666666666667, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71981414, Length=120, Percent_Identity=36.6666666666667, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71981411, Length=120, Percent_Identity=36.6666666666667, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17541900, Length=123, Percent_Identity=39.0243902439024, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17541898, Length=123, Percent_Identity=39.0243902439024, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193206531, Length=123, Percent_Identity=39.0243902439024, Blast_Score=69, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193206533, Length=123, Percent_Identity=39.0243902439024, Blast_Score=69, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193203261, Length=123, Percent_Identity=32.520325203252, Blast_Score=62, Evalue=1e-10, Organism=Drosophila melanogaster, GI24581260, Length=130, Percent_Identity=36.1538461538462, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI24581258, Length=130, Percent_Identity=36.1538461538462, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI24583835, Length=132, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=4e-14, Organism=Drosophila melanogaster, GI28571867, Length=130, Percent_Identity=37.6923076923077, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571865, Length=130, Percent_Identity=37.6923076923077, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24650843, Length=129, Percent_Identity=37.2093023255814, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI281359521, Length=129, Percent_Identity=34.1085271317829, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI281359519, Length=129, Percent_Identity=34.1085271317829, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI28558752, Length=129, Percent_Identity=34.1085271317829, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI28558750, Length=129, Percent_Identity=34.1085271317829, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI28558756, Length=129, Percent_Identity=34.1085271317829, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI28558754, Length=129, Percent_Identity=34.1085271317829, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI19921030, Length=95, Percent_Identity=43.1578947368421, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI221330480, Length=126, Percent_Identity=34.9206349206349, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI28573593, Length=126, Percent_Identity=34.9206349206349, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI45551135, Length=126, Percent_Identity=34.9206349206349, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI45550479, Length=126, Percent_Identity=34.9206349206349, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI221330476, Length=126, Percent_Identity=34.9206349206349, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI161082085, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI161082110, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI161082106, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI161082096, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI161082081, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI161082099, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI161082089, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI221330478, Length=127, Percent_Identity=34.6456692913386, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI221330482, Length=127, Percent_Identity=34.6456692913386, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI221330474, Length=127, Percent_Identity=34.6456692913386, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI281363919, Length=127, Percent_Identity=34.6456692913386, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI161082092, Length=120, Percent_Identity=34.1666666666667, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI221472807, Length=119, Percent_Identity=33.6134453781513, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI17998549, Length=131, Percent_Identity=31.2977099236641, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24639454, Length=95, Percent_Identity=42.1052631578947, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI45552223, Length=119, Percent_Identity=33.6134453781513, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24663102, Length=113, Percent_Identity=38.0530973451327, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24663106, Length=113, Percent_Identity=38.0530973451327, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24663095, Length=113, Percent_Identity=38.0530973451327, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI21357681, Length=113, Percent_Identity=38.0530973451327, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24667933, Length=130, Percent_Identity=32.3076923076923, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI24663091, Length=113, Percent_Identity=38.0530973451327, Blast_Score=63, Evalue=6e-11, Organism=Drosophila melanogaster, GI45550629, Length=119, Percent_Identity=34.453781512605, Blast_Score=63, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002110 - InterPro: IPR020683 [H]
Pfam domain/function: PF00023 Ank [H]
EC number: NA
Molecular weight: Translated: 14813; Mature: 14813
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVENVNTKDKHGHTPLIDAAKAGDVDAIRDLIGRGADLEAKSEKGKTALHYAAANGQAAA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHH IRALLEAGAQVDPRDLEWHTPLMLAANYGCNECVEDLLTAGADPLAKMKLGNTALTYAEA HHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHCCCCEEEEEECC NGHPDTLDLIKKAQRAKSGTA CCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVENVNTKDKHGHTPLIDAAKAGDVDAIRDLIGRGADLEAKSEKGKTALHYAAANGQAAA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHH IRALLEAGAQVDPRDLEWHTPLMLAANYGCNECVEDLLTAGADPLAKMKLGNTALTYAEA HHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHCCCCEEEEEECC NGHPDTLDLIKKAQRAKSGTA CCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8390993 [H]