| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is atoS [C]
Identifier: 39998508
GI number: 39998508
Start: 3762534
End: 3764858
Strand: Reverse
Name: atoS [C]
Synonym: GSU3419
Alternate gene names: 39998508
Gene position: 3764858-3762534 (Counterclockwise)
Preceding gene: 39998510
Following gene: 39998507
Centisome position: 98.71
GC content: 61.89
Gene sequence:
>2325_bases ATGTTTCGATTGGTGGGATTGCGCTGTTTCGTTTGTGTATTGTCGCGCCTGTGGCCGGTCATTATGCTCGTTGGGGTGTA TTCCGTTCCGGCAAGCGCCGACTACGAGGCGCGGGCGGCCAACCACATCCTGGTGCTCCATTCCTATCACCCCGGGTATC CGTGGACCGACCAGGTCATGGCGGGAATCCAGGATGTGCTGTCGAATTCCTTCGAACGGATTCACATGGACGTGGAATAT CTCGATGTGAAGCGCCACCGGCAGTCCGCCCAGGTTTCCCGCATGTTCGACGCGGTGTTGCACCACAAGCTGCGGCAACG GTCATTCAATCTGGTGATCGCATCCGGTAACGAGGCGCTCGACTACGCTCTCGCCAATCGTCGTGACCTGTTCCGCGGTG CACCTATCGTATCCTGCGCAACCGTCGGCCCCGATCCGCTCCCCACCGCCTCGGCCTGGCATACGGGCGTCAGGGCCGAT CCCGATTTTACGGGAGTCATCAGGCAGGCTCTGGCGCTTCATCCCGGCACGACCAGAATGATCGTCATCGGCGGCACCCG TGAGCTGACGGATCGCCTTAATACCCAGCGACTCATGGCGGCAAGCCAGGCATTCGCGGGGCGGGTAACGTTCGATTACT GGAATGACCTGTCGGCCGAGGAGATCATCGCACGACTCCAGTCCCCTGTCCGCGGGGCCGTAATCCTCATCAACGGGTCG ATTCGCGACCGTTCGGGGAATCTTCTCTCGTTCCACGAGCAGACAGGCCTGCTGCGGCAGGGGGGGCTTCCCCTCTACAG CTTCTGGAACGTTTTTCTCGGCGAGGGGATCGTGGGGGGGCCGTTCGTGGATGTGCACGAGCAGGGGCGAATTGCCGCGC GGACGGCACTGCGAGTGCTTCATGGGGAGCCGGTGGCCGATATTCCGGTGGAGCAATCGGTCATCACCGTACCGACCTTT GACTACGAGGAACTGCAGCGACTCGGGATATCTCCCCGGCACCTGCCGCCAAAGCACATTCTGGTCAACGGACCCAAGCC GTTCTACAACCTGAGCAAGTCCCAGTTTCTCTGGTCTGTCGCGATTCTGCTCGGCTCCCTGAGCATCACCCTGCTGCTCA CCTGGAGCATCCTGCTCCGCCGCCGGGCCGAGCTCAGACTGCGCCAGAGCGAGCAGAACTACCGGCAGCTTTCCCGGCAG TTCGGGATCATTCTGGACGGCATCCCCGACAGTCTCACCCTCATTTCCCACGACATGAAGGTGGTCTGGTCCAACAAGGT GGCCGGTGATCCCTTTGGGGCGCCGTTGCGGACCGTGCCCGGCGAATACTGTTGCGAGATGCTCTACAACCGCACCACTC TCTGTGATAACTGTCCGGCGGTGAGGGCTTTCGAGTCGGGCGAGAACGAGGAATCCACCATTACCACGCCCGACGGCAGG ACCCTTGAGGTGAAGGCATTCCCGGTCAGGGAGGGGTCGGAGACGGTGAGCCACGTCATCATGCTGGCCAGCGACATCTC CGACAAAGTCCGTCTTCTGGAGGAAACGGTCAGGACGAGCCGGCTCGCATCGCTGGGTGAGCTGGCAGCCGGCGTGGCTC ACGAGATCAACAACCCCAATGCGGTGATCCTGCTTAACGTGGACCTGGTCAAAAAGGTGTGCCGGGAAGCAATCCCCCTG CTGCTGGATCGCGTTGACCGGCAGAGCGAGTTGGCGATCGGGGGGATCCCCTGGTCGGAAATGAGCGAGGAGCTGCCACT CCTGCTGACGGAGATGGAAGAGGGCGCCGGCCGCATCAAGCGGATCGTGGATGACCTCAAGGACTTCGCCCGCGGCGACG GCGCCGACCAGTGCGAGCCTGTGGACCTGAACGAGGCGGTCCGGGCCTCGGTCCGCTTGGTGGGCAATGCCATTAAAAAT GCCACCGACCATTTCGCGCTGGAGCTGGCCCCTGGCCTCCCTTCCTTCGAGGGAAGCATCCAACGGATCGAGCAGGTAGT GGTCAACCTGATCATGAACGCCTGCCAGTCCCTCCAGGACAAAACGAAAGGGATCACCGTCAGCACCGGCTACGACCTTA TCCATGGGGTCTACACGATTCAGGTGCGCGACGAGGGGCAGGGGATTCCCCCGGAGGTCCTTCCCCGCATCACCGATCCG TTCTTCACCACAAAGCGCGAAACCGGCGGCACGGGTCTCGGTCTGTCGATCTGCATGCGCATCGTCAGAAGTTATGGCGG CACACTCGAATTCCAGTCCGTCCCGGGAGCCGGGACAACGGCTACCCTGTCCCTGCCGGCCGAAAAGGAGGTTATTGCCG CATGA
Upstream 100 bases:
>100_bases GAAGAGGCCGAACGCTCTGTGGAATAAAAAGTGCTAATAAAGTCTTCTGATTAGATTGTATACATTGATTTAGCGATATT GTTGCTACTGAGAGAGCTCT
Downstream 100 bases:
>100_bases GCCCGGAAAAGTACCCCCCCAAGCCCATCCTGCTGGTTGACGATGAGGCTGCGTGGTTGCGCAGCCTGTCGCTCACGCTA CGGGAAGCCACCGGCATTGA
Product: sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 774; Mature: 774
Protein sequence:
>774_residues MFRLVGLRCFVCVLSRLWPVIMLVGVYSVPASADYEARAANHILVLHSYHPGYPWTDQVMAGIQDVLSNSFERIHMDVEY LDVKRHRQSAQVSRMFDAVLHHKLRQRSFNLVIASGNEALDYALANRRDLFRGAPIVSCATVGPDPLPTASAWHTGVRAD PDFTGVIRQALALHPGTTRMIVIGGTRELTDRLNTQRLMAASQAFAGRVTFDYWNDLSAEEIIARLQSPVRGAVILINGS IRDRSGNLLSFHEQTGLLRQGGLPLYSFWNVFLGEGIVGGPFVDVHEQGRIAARTALRVLHGEPVADIPVEQSVITVPTF DYEELQRLGISPRHLPPKHILVNGPKPFYNLSKSQFLWSVAILLGSLSITLLLTWSILLRRRAELRLRQSEQNYRQLSRQ FGIILDGIPDSLTLISHDMKVVWSNKVAGDPFGAPLRTVPGEYCCEMLYNRTTLCDNCPAVRAFESGENEESTITTPDGR TLEVKAFPVREGSETVSHVIMLASDISDKVRLLEETVRTSRLASLGELAAGVAHEINNPNAVILLNVDLVKKVCREAIPL LLDRVDRQSELAIGGIPWSEMSEELPLLLTEMEEGAGRIKRIVDDLKDFARGDGADQCEPVDLNEAVRASVRLVGNAIKN ATDHFALELAPGLPSFEGSIQRIEQVVVNLIMNACQSLQDKTKGITVSTGYDLIHGVYTIQVRDEGQGIPPEVLPRITDP FFTTKRETGGTGLGLSICMRIVRSYGGTLEFQSVPGAGTTATLSLPAEKEVIAA
Sequences:
>Translated_774_residues MFRLVGLRCFVCVLSRLWPVIMLVGVYSVPASADYEARAANHILVLHSYHPGYPWTDQVMAGIQDVLSNSFERIHMDVEY LDVKRHRQSAQVSRMFDAVLHHKLRQRSFNLVIASGNEALDYALANRRDLFRGAPIVSCATVGPDPLPTASAWHTGVRAD PDFTGVIRQALALHPGTTRMIVIGGTRELTDRLNTQRLMAASQAFAGRVTFDYWNDLSAEEIIARLQSPVRGAVILINGS IRDRSGNLLSFHEQTGLLRQGGLPLYSFWNVFLGEGIVGGPFVDVHEQGRIAARTALRVLHGEPVADIPVEQSVITVPTF DYEELQRLGISPRHLPPKHILVNGPKPFYNLSKSQFLWSVAILLGSLSITLLLTWSILLRRRAELRLRQSEQNYRQLSRQ FGIILDGIPDSLTLISHDMKVVWSNKVAGDPFGAPLRTVPGEYCCEMLYNRTTLCDNCPAVRAFESGENEESTITTPDGR TLEVKAFPVREGSETVSHVIMLASDISDKVRLLEETVRTSRLASLGELAAGVAHEINNPNAVILLNVDLVKKVCREAIPL LLDRVDRQSELAIGGIPWSEMSEELPLLLTEMEEGAGRIKRIVDDLKDFARGDGADQCEPVDLNEAVRASVRLVGNAIKN ATDHFALELAPGLPSFEGSIQRIEQVVVNLIMNACQSLQDKTKGITVSTGYDLIHGVYTIQVRDEGQGIPPEVLPRITDP FFTTKRETGGTGLGLSICMRIVRSYGGTLEFQSVPGAGTTATLSLPAEKEVIAA >Mature_774_residues MFRLVGLRCFVCVLSRLWPVIMLVGVYSVPASADYEARAANHILVLHSYHPGYPWTDQVMAGIQDVLSNSFERIHMDVEY LDVKRHRQSAQVSRMFDAVLHHKLRQRSFNLVIASGNEALDYALANRRDLFRGAPIVSCATVGPDPLPTASAWHTGVRAD PDFTGVIRQALALHPGTTRMIVIGGTRELTDRLNTQRLMAASQAFAGRVTFDYWNDLSAEEIIARLQSPVRGAVILINGS IRDRSGNLLSFHEQTGLLRQGGLPLYSFWNVFLGEGIVGGPFVDVHEQGRIAARTALRVLHGEPVADIPVEQSVITVPTF DYEELQRLGISPRHLPPKHILVNGPKPFYNLSKSQFLWSVAILLGSLSITLLLTWSILLRRRAELRLRQSEQNYRQLSRQ FGIILDGIPDSLTLISHDMKVVWSNKVAGDPFGAPLRTVPGEYCCEMLYNRTTLCDNCPAVRAFESGENEESTITTPDGR TLEVKAFPVREGSETVSHVIMLASDISDKVRLLEETVRTSRLASLGELAAGVAHEINNPNAVILLNVDLVKKVCREAIPL LLDRVDRQSELAIGGIPWSEMSEELPLLLTEMEEGAGRIKRIVDDLKDFARGDGADQCEPVDLNEAVRASVRLVGNAIKN ATDHFALELAPGLPSFEGSIQRIEQVVVNLIMNACQSLQDKTKGITVSTGYDLIHGVYTIQVRDEGQGIPPEVLPRITDP FFTTKRETGGTGLGLSICMRIVRSYGGTLEFQSVPGAGTTATLSLPAEKEVIAA
Specific function: Member Of The Two-Component Regulatory System Atos/Atoc; May Activate Atoc By Phosphorylation. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=390, Percent_Identity=27.6923076923077, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1790436, Length=255, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=8e-24, Organism=Escherichia coli, GI145693157, Length=481, Percent_Identity=24.5322245322245, Blast_Score=90, Evalue=5e-19, Organism=Escherichia coli, GI1790300, Length=385, Percent_Identity=24.9350649350649, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1786600, Length=407, Percent_Identity=23.3415233415233, Blast_Score=76, Evalue=6e-15, Organism=Escherichia coli, GI87081816, Length=176, Percent_Identity=27.8409090909091, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1788713, Length=325, Percent_Identity=24.3076923076923, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1789149, Length=181, Percent_Identity=26.5193370165746, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1788393, Length=280, Percent_Identity=23.9285714285714, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR001638 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00497 SBP_bac_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 85291; Mature: 85291
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRLVGLRCFVCVLSRLWPVIMLVGVYSVPASADYEARAANHILVLHSYHPGYPWTDQVM CCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHH AGIQDVLSNSFERIHMDVEYLDVKRHRQSAQVSRMFDAVLHHKLRQRSFNLVIASGNEAL HHHHHHHHCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH DYALANRRDLFRGAPIVSCATVGPDPLPTASAWHTGVRADPDFTGVIRQALALHPGTTRM HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEE IVIGGTRELTDRLNTQRLMAASQAFAGRVTFDYWNDLSAEEIIARLQSPVRGAVILINGS EEECCCHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCCCHHHHHHHHHCCCCCEEEEEECC IRDRSGNLLSFHEQTGLLRQGGLPLYSFWNVFLGEGIVGGPFVDVHEQGRIAARTALRVL CCCCCCCEEEEHHHCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH HGEPVADIPVEQSVITVPTFDYEELQRLGISPRHLPPKHILVNGPKPFYNLSKSQFLWSV CCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHH AILLGSLSITLLLTWSILLRRRAELRLRQSEQNYRQLSRQFGIILDGIPDSLTLISHDMK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHCCEE VVWSNKVAGDPFGAPLRTVPGEYCCEMLYNRTTLCDNCPAVRAFESGENEESTITTPDGR EEECCCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC TLEVKAFPVREGSETVSHVIMLASDISDKVRLLEETVRTSRLASLGELAAGVAHEINNPN EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AVILLNVDLVKKVCREAIPLLLDRVDRQSELAIGGIPWSEMSEELPLLLTEMEEGAGRIK EEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHHHHHH RIVDDLKDFARGDGADQCEPVDLNEAVRASVRLVGNAIKNATDHFALELAPGLPSFEGSI HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH QRIEQVVVNLIMNACQSLQDKTKGITVSTGYDLIHGVYTIQVRDEGQGIPPEVLPRITDP HHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCEEEEEEECCCCCCCHHHHHCCCCC FFTTKRETGGTGLGLSICMRIVRSYGGTLEFQSVPGAGTTATLSLPAEKEVIAA CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCCHHHCC >Mature Secondary Structure MFRLVGLRCFVCVLSRLWPVIMLVGVYSVPASADYEARAANHILVLHSYHPGYPWTDQVM CCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHH AGIQDVLSNSFERIHMDVEYLDVKRHRQSAQVSRMFDAVLHHKLRQRSFNLVIASGNEAL HHHHHHHHCCHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH DYALANRRDLFRGAPIVSCATVGPDPLPTASAWHTGVRADPDFTGVIRQALALHPGTTRM HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEE IVIGGTRELTDRLNTQRLMAASQAFAGRVTFDYWNDLSAEEIIARLQSPVRGAVILINGS EEECCCHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCCCHHHHHHHHHCCCCCEEEEEECC IRDRSGNLLSFHEQTGLLRQGGLPLYSFWNVFLGEGIVGGPFVDVHEQGRIAARTALRVL CCCCCCCEEEEHHHCCHHHHCCCCHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH HGEPVADIPVEQSVITVPTFDYEELQRLGISPRHLPPKHILVNGPKPFYNLSKSQFLWSV CCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHH AILLGSLSITLLLTWSILLRRRAELRLRQSEQNYRQLSRQFGIILDGIPDSLTLISHDMK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHCCEE VVWSNKVAGDPFGAPLRTVPGEYCCEMLYNRTTLCDNCPAVRAFESGENEESTITTPDGR EEECCCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC TLEVKAFPVREGSETVSHVIMLASDISDKVRLLEETVRTSRLASLGELAAGVAHEINNPN EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AVILLNVDLVKKVCREAIPLLLDRVDRQSELAIGGIPWSEMSEELPLLLTEMEEGAGRIK EEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHHHHHH RIVDDLKDFARGDGADQCEPVDLNEAVRASVRLVGNAIKNATDHFALELAPGLPSFEGSI HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH QRIEQVVVNLIMNACQSLQDKTKGITVSTGYDLIHGVYTIQVRDEGQGIPPEVLPRITDP HHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHCCEEEEEEECCCCCCCHHHHHCCCCC FFTTKRETGGTGLGLSICMRIVRSYGGTLEFQSVPGAGTTATLSLPAEKEVIAA CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1333793 [H]