| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is ydcP [H]
Identifier: 39998436
GI number: 39998436
Start: 3677009
End: 3679381
Strand: Direct
Name: ydcP [H]
Synonym: GSU3347
Alternate gene names: 39998436
Gene position: 3677009-3679381 (Clockwise)
Preceding gene: 39998434
Following gene: 39998437
Centisome position: 96.4
GC content: 65.57
Gene sequence:
>2373_bases ATGCTCAACACCAACGAACCAATGAAAAAACCCGAACTTCTCGCCCCTGCCGGCTCCCTTGAGGCATTCTTCGCCGCCAT GGAAAAGGGCGCCGACGCGGTCTATGCCGGTCTGCGCGATTTCTCCGCCCGGGCCAAGGCCAAGAACTTCAGCACCTCCC AGATGGAGCGGATGACCACCTATGCCCACAGCCTGGGCCGCAAGGTCTACGTCACCATCAATACCCTTGTGAAGGAAGCG GAGCTGCCGCAGCTCGTGGAGACCCTCGCTGCCCTGGAGGCCATGGGCACCGACGGGGTCATCCTCCAGGATCTGGGGGT GGCACGGCTGATCCGCGACCACTTTCCCGGCATTCCCCGCCACGCATCCACCCAGATGACGATCCACAACCTGGCTGGGG TCCAGGTGCTGGGCGAGATGGGCTTCGAGCGGGTCGTGCTCGCCCGCGAGCTCCACCTGGACGACATCCGCCGCATCTGC GGATCGACGCCGGTGGAAATCGAATGCTTCATCCATGGAGCGCTCTGCTTCGCCATCTCGGGGCAGTGCTACTTCTCGTC CTTTCTCGGCGGGCACAGCGGCAACCGGGGGCGCTGTGCCCAGCCCTGCCGCCGCCACTATCGCTATCGGAGCAAGGATG GGTACTACTTCTCCACCAATGACCTCTCCACGGTGGATCTGATCCCTGACCTGGCCGCCGCCGGCGTGGCGTCGCTCAAG ATCGAGGGACGGATGAAGTCGGCCGAGTACGTGGCGAGCGTGGTGGAGGCCTACCGGATGGTGCTGGACGCGCCGGAGCG GAAACGCGCCGAGGCCACCGGCCGCGCCAAGGAGCTTCTGAAGCTCTCCTTCGGCCGGGTGCCGACCAAGGGCTTCATGG GCTCCCGCACCCCCACCGACATTGCCATCCCCACCCTGCGCGGGGCCACGGGCCGGTTTCTGGGAGAGATCACCGGGGTG AAGGGCAACAGAATCACCTTCGAAACCAAGGACCCACTCTTCGTGGGGGACCGGATCAGGGTGCAGCCGAAAAGCGACAT GGCCGGCCGCGCCTTCACGGTGAAAGAACTTTTTGCCGGTCAGGGCAAGGTGAAATCGGTCCGGGAAAAAAGCATTGTCT CCGTGATCTCGCCTTTCCCATTCAAGGTGGGGGATGCAGTCTTCAAGGTCTCGTCCGAAACCGCGTTCACCATGAGTGAA AATGCCTGCCTCAAGCGCCTGGATGCGGTCAAGCCCTGCGCCATCCCCTGCGACCTGTCGCTAGCCCTGGACGGGGAGAC CCTTCAGGTGACCGGCCTGGCTGCCGGGGGGCGGGTTGAGGCCGCCTTCCCCGTGGGTGTTTTGGAACCTGCCCGGACCG AAGACATGACCGGCGTGCTCAGGGCCCAGTTCTCCCGCACCGGCGACACCCCCTTCGAACTGAGGGGCCTCGACGCGCCC GGCTTCCCCCGCGTTCTCATCCCGCCGGCAAAGCTCAAGGAAATCCGCCGGGAATTCTATCGGCTTCTGGCCGAGGAGGC CGTGGCCGGTGCCCGGATCCGCAAGGCGGAGGCCCGGCGACGGGCACTGGCGGCCCTCGTTCCGGCGGCACAGCCGCGTC GGGAGCCGAGGTCGGAAGTCATCGTGCGAATCGAGCACCTGCGGGACGCCAGCCTCCTGCGGCAGCCGGGTGTCGATGGC ATCACCCTGCCGGTCTCCCGGGCCAACATCCACCAACTGCCCCTTGCGGCCCGCAAGCTGCGAGGGGACGCGGATCGGAT CACCTGGCACCTGCCGTTCATCATGTTCGATGACGACCTCCCCTTCTACCGGGAGGCGGTGGATGTCATCCTGGCCCACG GATTCCGGCGTTTCGAGCTATCCAACCTCTCCCACGCGGCCCTGCTGAAGGGACGCGACGCCGAGCTTGCCACCGACTAT CGCCTGTTCTCGCTCAACACCCAGGCGATCCTTGCCTGGCACGAACTGGGGGTCACAACCGCCACCCTCTACATCGAGGA TGACGCCGAGAACATGGCGCGGCTCCTGGGGGCCGCCGTGCCGGTGAAACGGCGGGTGCTGGTCTACGCCGGCGTACCGG CCATGACCACTCGCATCGCCATCCGCGGGGTAAAAAACGATGCCCCTCTCGTCTCGGACCGGGGCGACGAGTATGACGTG GCGATCCGGGGAGACCTCACCACGATTACCCCAGCCACACGCTTCTCCATCACCCAATTCCGGGGACAGCTCCAGGAGAC GGGCTGCGGCACCTTCATCGTGGACCTGTCCCAAGCGCCCCGTGAGCAGTGGCGACCGATCCTCGACACCTTTGCCCGGG GCGGCGAACTGCCGGGGACCAGCCCCTTCAACTTCGTAATGGGCCTCGTGTAA
Upstream 100 bases:
>100_bases CCTTATATCACTTCGCTCCGGCCAACTCAACACAATTCCCGGCCCGGGGAGGGGAGCTTCGCCCTTGACCCGGCAACCTT GCATCGGGTAGTCTGAACCG
Downstream 100 bases:
>100_bases AGCCAATAACCGGCACAAAACAGGGGACACAGAGAAAATCACAGAGTAAGCCCGGGAAATTTTCCTCCGGTTTTCCTCTG GGTGCTTTGTGGTCAAAAAA
Product: U32 family peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 790; Mature: 790
Protein sequence:
>790_residues MLNTNEPMKKPELLAPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFSTSQMERMTTYAHSLGRKVYVTINTLVKEA ELPQLVETLAALEAMGTDGVILQDLGVARLIRDHFPGIPRHASTQMTIHNLAGVQVLGEMGFERVVLARELHLDDIRRIC GSTPVEIECFIHGALCFAISGQCYFSSFLGGHSGNRGRCAQPCRRHYRYRSKDGYYFSTNDLSTVDLIPDLAAAGVASLK IEGRMKSAEYVASVVEAYRMVLDAPERKRAEATGRAKELLKLSFGRVPTKGFMGSRTPTDIAIPTLRGATGRFLGEITGV KGNRITFETKDPLFVGDRIRVQPKSDMAGRAFTVKELFAGQGKVKSVREKSIVSVISPFPFKVGDAVFKVSSETAFTMSE NACLKRLDAVKPCAIPCDLSLALDGETLQVTGLAAGGRVEAAFPVGVLEPARTEDMTGVLRAQFSRTGDTPFELRGLDAP GFPRVLIPPAKLKEIRREFYRLLAEEAVAGARIRKAEARRRALAALVPAAQPRREPRSEVIVRIEHLRDASLLRQPGVDG ITLPVSRANIHQLPLAARKLRGDADRITWHLPFIMFDDDLPFYREAVDVILAHGFRRFELSNLSHAALLKGRDAELATDY RLFSLNTQAILAWHELGVTTATLYIEDDAENMARLLGAAVPVKRRVLVYAGVPAMTTRIAIRGVKNDAPLVSDRGDEYDV AIRGDLTTITPATRFSITQFRGQLQETGCGTFIVDLSQAPREQWRPILDTFARGGELPGTSPFNFVMGLV
Sequences:
>Translated_790_residues MLNTNEPMKKPELLAPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFSTSQMERMTTYAHSLGRKVYVTINTLVKEA ELPQLVETLAALEAMGTDGVILQDLGVARLIRDHFPGIPRHASTQMTIHNLAGVQVLGEMGFERVVLARELHLDDIRRIC GSTPVEIECFIHGALCFAISGQCYFSSFLGGHSGNRGRCAQPCRRHYRYRSKDGYYFSTNDLSTVDLIPDLAAAGVASLK IEGRMKSAEYVASVVEAYRMVLDAPERKRAEATGRAKELLKLSFGRVPTKGFMGSRTPTDIAIPTLRGATGRFLGEITGV KGNRITFETKDPLFVGDRIRVQPKSDMAGRAFTVKELFAGQGKVKSVREKSIVSVISPFPFKVGDAVFKVSSETAFTMSE NACLKRLDAVKPCAIPCDLSLALDGETLQVTGLAAGGRVEAAFPVGVLEPARTEDMTGVLRAQFSRTGDTPFELRGLDAP GFPRVLIPPAKLKEIRREFYRLLAEEAVAGARIRKAEARRRALAALVPAAQPRREPRSEVIVRIEHLRDASLLRQPGVDG ITLPVSRANIHQLPLAARKLRGDADRITWHLPFIMFDDDLPFYREAVDVILAHGFRRFELSNLSHAALLKGRDAELATDY RLFSLNTQAILAWHELGVTTATLYIEDDAENMARLLGAAVPVKRRVLVYAGVPAMTTRIAIRGVKNDAPLVSDRGDEYDV AIRGDLTTITPATRFSITQFRGQLQETGCGTFIVDLSQAPREQWRPILDTFARGGELPGTSPFNFVMGLV >Mature_790_residues MLNTNEPMKKPELLAPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFSTSQMERMTTYAHSLGRKVYVTINTLVKEA ELPQLVETLAALEAMGTDGVILQDLGVARLIRDHFPGIPRHASTQMTIHNLAGVQVLGEMGFERVVLARELHLDDIRRIC GSTPVEIECFIHGALCFAISGQCYFSSFLGGHSGNRGRCAQPCRRHYRYRSKDGYYFSTNDLSTVDLIPDLAAAGVASLK IEGRMKSAEYVASVVEAYRMVLDAPERKRAEATGRAKELLKLSFGRVPTKGFMGSRTPTDIAIPTLRGATGRFLGEITGV KGNRITFETKDPLFVGDRIRVQPKSDMAGRAFTVKELFAGQGKVKSVREKSIVSVISPFPFKVGDAVFKVSSETAFTMSE NACLKRLDAVKPCAIPCDLSLALDGETLQVTGLAAGGRVEAAFPVGVLEPARTEDMTGVLRAQFSRTGDTPFELRGLDAP GFPRVLIPPAKLKEIRREFYRLLAEEAVAGARIRKAEARRRALAALVPAAQPRREPRSEVIVRIEHLRDASLLRQPGVDG ITLPVSRANIHQLPLAARKLRGDADRITWHLPFIMFDDDLPFYREAVDVILAHGFRRFELSNLSHAALLKGRDAELATDY RLFSLNTQAILAWHELGVTTATLYIEDDAENMARLLGAAVPVKRRVLVYAGVPAMTTRIAIRGVKNDAPLVSDRGDEYDV AIRGDLTTITPATRFSITQFRGQLQETGCGTFIVDLSQAPREQWRPILDTFARGGELPGTSPFNFVMGLV
Specific function: Unknown
COG id: COG0826
COG function: function code O; Collagenase and related proteases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U32 family [H]
Homologues:
Organism=Escherichia coli, GI87081910, Length=374, Percent_Identity=35.8288770053476, Blast_Score=198, Evalue=1e-51, Organism=Escherichia coli, GI1788397, Length=432, Percent_Identity=30.3240740740741, Blast_Score=174, Evalue=2e-44, Organism=Escherichia coli, GI1789548, Length=292, Percent_Identity=31.8493150684932, Blast_Score=141, Evalue=2e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020988 - InterPro: IPR001539 [H]
Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 86716; Mature: 86716
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNTNEPMKKPELLAPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFSTSQMERMTT CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH YAHSLGRKVYVTINTLVKEAELPQLVETLAALEAMGTDGVILQDLGVARLIRDHFPGIPR HHHHCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCC HASTQMTIHNLAGVQVLGEMGFERVVLARELHLDDIRRICGSTPVEIECFIHGALCFAIS CCCCEEEHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEEEEC GQCYFSSFLGGHSGNRGRCAQPCRRHYRYRSKDGYYFSTNDLSTVDLIPDLAAAGVASLK CCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEE IEGRMKSAEYVASVVEAYRMVLDAPERKRAEATGRAKELLKLSFGRVPTKGFMGSRTPTD EECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC IAIPTLRGATGRFLGEITGVKGNRITFETKDPLFVGDRIRVQPKSDMAGRAFTVKELFAG EECCCCCCCCHHHHHHCCCCCCCEEEEECCCCEEECCEEEECCCCCCCCCEEEHHHHHCC QGKVKSVREKSIVSVISPFPFKVGDAVFKVSSETAFTMSENACLKRLDAVKPCAIPCDLS CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHCCCCCCCCCCEE LALDGETLQVTGLAAGGRVEAAFPVGVLEPARTEDMTGVLRAQFSRTGDTPFELRGLDAP EEECCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC GFPRVLIPPAKLKEIRREFYRLLAEEAVAGARIRKAEARRRALAALVPAAQPRREPRSEV CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH IVRIEHLRDASLLRQPGVDGITLPVSRANIHQLPLAARKLRGDADRITWHLPFIMFDDDL HHHHHHHCCHHHHHCCCCCCEEEECCCCCHHHCCHHHHHHCCCCCEEEEEEEEEEECCCC PFYREAVDVILAHGFRRFELSNLSHAALLKGRDAELATDYRLFSLNTQAILAWHELGVTT CHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCCCCEEEEEECCHHEEEEHHCCCEE ATLYIEDDAENMARLLGAAVPVKRRVLVYAGVPAMTTRIAIRGVKNDAPLVSDRGDEYDV EEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCHHEEEEEEEECCCCCCCCCCCCCCEEE AIRGDLTTITPATRFSITQFRGQLQETGCGTFIVDLSQAPREQWRPILDTFARGGELPGT EEECCCEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCC SPFNFVMGLV CHHHHHHCCC >Mature Secondary Structure MLNTNEPMKKPELLAPAGSLEAFFAAMEKGADAVYAGLRDFSARAKAKNFSTSQMERMTT CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH YAHSLGRKVYVTINTLVKEAELPQLVETLAALEAMGTDGVILQDLGVARLIRDHFPGIPR HHHHCCCEEEEEHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCCC HASTQMTIHNLAGVQVLGEMGFERVVLARELHLDDIRRICGSTPVEIECFIHGALCFAIS CCCCEEEHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEEEEEC GQCYFSSFLGGHSGNRGRCAQPCRRHYRYRSKDGYYFSTNDLSTVDLIPDLAAAGVASLK CCHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEEEE IEGRMKSAEYVASVVEAYRMVLDAPERKRAEATGRAKELLKLSFGRVPTKGFMGSRTPTD EECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC IAIPTLRGATGRFLGEITGVKGNRITFETKDPLFVGDRIRVQPKSDMAGRAFTVKELFAG EECCCCCCCCHHHHHHCCCCCCCEEEEECCCCEEECCEEEECCCCCCCCCEEEHHHHHCC QGKVKSVREKSIVSVISPFPFKVGDAVFKVSSETAFTMSENACLKRLDAVKPCAIPCDLS CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECHHHHHHHHHCCCCCCCCCCEE LALDGETLQVTGLAAGGRVEAAFPVGVLEPARTEDMTGVLRAQFSRTGDTPFELRGLDAP EEECCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC GFPRVLIPPAKLKEIRREFYRLLAEEAVAGARIRKAEARRRALAALVPAAQPRREPRSEV CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH IVRIEHLRDASLLRQPGVDGITLPVSRANIHQLPLAARKLRGDADRITWHLPFIMFDDDL HHHHHHHCCHHHHHCCCCCCEEEECCCCCHHHCCHHHHHHCCCCCEEEEEEEEEEECCCC PFYREAVDVILAHGFRRFELSNLSHAALLKGRDAELATDYRLFSLNTQAILAWHELGVTT CHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCCCCEEEEEECCHHEEEEHHCCCEE ATLYIEDDAENMARLLGAAVPVKRRVLVYAGVPAMTTRIAIRGVKNDAPLVSDRGDEYDV EEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCHHEEEEEEEECCCCCCCCCCCCCCEEE AIRGDLTTITPATRFSITQFRGQLQETGCGTFIVDLSQAPREQWRPILDTFARGGELPGT EEECCCEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCC SPFNFVMGLV CHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]