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The map label for this gene is ydcN [C]

Identifier: 39998387

GI number: 39998387

Start: 3618530

End: 3619093

Strand: Direct

Name: ydcN [C]

Synonym: GSU3298

Alternate gene names: 39998387

Gene position: 3618530-3619093 (Clockwise)

Preceding gene: 39998386

Following gene: 308513341

Centisome position: 94.87

GC content: 54.08

Gene sequence:

>564_bases
ATGACCGAGTACAATATCGGGGCGAAAATCAAAAAGCTCCGTCTCGCCAAGAAGCTGACACTCCAGGCTGTGGCACGCGA
GACCGGCTTTTCCCCCGCCCTCATCTCCCAAATCGAGAACAACAACGTTTCTCCGCCCATCGCCACTCTTTCGAAGATCG
CCAAGTTCTTCGATGTGAAGATCAGTCTTTTCTTCTCTGAGGATGAGGAGGAGTATCGCTACGAAGTAGTGCGCCGGGGC
GAACGCAAGGTCATTCCGCGCGTTATCTCCCGGGCCGGCACCAGCCAGGGGTACTCCTACGAATCGCTCTCCTTCCGCAA
GCAAAACAAGAAGATGGAGCCGTTTCTGCTGACGGTCACCGAAAAGGCCGCAGAAGAAAACACCTATAACCATGACGGTG
AAGAGTTTCTGTTCGTCATGAAGGGAACGGCGGAGCTTCTGCTTGAGGATGAGCGCGTTATCCTTGAAGAAGGTGACTGT
GTCTATTTTGACTCCTCCCTGAAGCATCGCCTCCTTTCCAGGGATGGCAGTGAAGTGCAGGTTCTCGCCGTAGTCACCCG
TTGA

Upstream 100 bases:

>100_bases
TTTATTTCTTAAAACACAACGACGCGGGAGAAGAACAGGAAGCCGGCTGCCGGCGACGCTTCCTCCCGCCGCCGGCGTTG
TGAGTGTTCCGGAGAGGTGG

Downstream 100 bases:

>100_bases
ACGGGTACCATTCGAACAAGTTCATGGGGCCGGTCCGTTGCACGAGCCCCTTTTTTTGTACAACGCTCCGTATACGGCAG
ATGGATTCACGGGGCCCGGC

Product: Cro/CI family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cupin 2 Domain-Containing Protein; HTH-Type Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator MerR Family; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator-Like Protein; Cupin Domain Protein; Epoxidase; Cupin 2 Barrel Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcription Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Phosphate Butyryltransferase; HTH_3family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLFFSEDEEEYRYEVVRRG
ERKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVTEKAAEENTYNHDGEEFLFVMKGTAELLLEDERVILEEGDC
VYFDSSLKHRLLSRDGSEVQVLAVVTR

Sequences:

>Translated_187_residues
MTEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLFFSEDEEEYRYEVVRRG
ERKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVTEKAAEENTYNHDGEEFLFVMKGTAELLLEDERVILEEGDC
VYFDSSLKHRLLSRDGSEVQVLAVVTR
>Mature_186_residues
TEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLFFSEDEEEYRYEVVRRGE
RKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVTEKAAEENTYNHDGEEFLFVMKGTAELLLEDERVILEEGDCV
YFDSSLKHRLLSRDGSEVQVLAVVTR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21380; Mature: 21248

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVK
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHEE
ISLFFSEDEEEYRYEVVRRGERKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVT
EEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEE
EKAAEENTYNHDGEEFLFVMKGTAELLLEDERVILEEGDCVYFDSSLKHRLLSRDGSEVQ
HHHHHCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCCEEEECHHHHHHHHHCCCCCEE
VLAVVTR
EEEEEEC
>Mature Secondary Structure 
TEYNIGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVK
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHEE
ISLFFSEDEEEYRYEVVRRGERKVIPRVISRAGTSQGYSYESLSFRKQNKKMEPFLLTVT
EEEEECCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEE
EKAAEENTYNHDGEEFLFVMKGTAELLLEDERVILEEGDCVYFDSSLKHRLLSRDGSEVQ
HHHHHCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCCEEEECHHHHHHHHHCCCCCEE
VLAVVTR
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA