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The map label for this gene is 39998330

Identifier: 39998330

GI number: 39998330

Start: 3553203

End: 3555641

Strand: Reverse

Name: 39998330

Synonym: GSU3240

Alternate gene names: NA

Gene position: 3555641-3553203 (Counterclockwise)

Preceding gene: 39998333

Following gene: 39998329

Centisome position: 93.22

GC content: 64.21

Gene sequence:

>2439_bases
GTGGGCACACGCTGTGCCGTAACGCCGGAACTCCGCTTTGTTCTTGCCTTTCCCGACGTCTACGAGGTCGGCATGAGCCA
CCTGGGGCTTCAGATTCTCTACGGCGTGCTCAACACCCTCGACGGTGTTGCCGCCGAGCGGGCCTATGCCCCCTGGCCCG
ACCGTGAGGCTCAACTGCGGGCAGAAGGGATACCGCTGGCCACTCTGGAGAGCGGCACCTCCCTGGATCGTGCCGATATC
GTTGGCTTTACTCTCCAGTATGAGCTTTCGTACACAAATATTCTCAATATGCTGGATCTGGCCGGCATCCCCCTGCTCGC
GTCAGAGCGGGACGAGCGCCATCCGCTCATAATCGGTGGCGGACCGTGCGCCTGCAACCCGGAGCCCTTGGCGGACTTTT
TCGATGCATTTCTCCTGGGTGACGGAGAAGAGGCGGTCATCGAAATAGCAGAGGCGTTCCGGGCATGGAAGCGTGCCGGC
GGAGCGCGGTCAGGGCTGCTTGAGCGGCTAGCCGGCATAGCCGGCGTGTATGTACCCTCTTTTTTTGCCGTGAGGTACGG
GGATAACAACAGGATCGCCGCCGTGGAGCCGTTGCGCCCCGACTACGGCCCGGTGAAGCGCCGCTTTCTGGCCGAGCTGG
AGCCGGCTGCCTATCCCACTGCCCCGGTCGTCCCCTTCCTGAAGACAATCCACGACCGGGTCAGTGTCGAGATCAGCCGA
GGCTGCACTCGCGGGTGCCGGTTCTGTCAGGCCGGCTACCTGTACCGGCCGGTGAGGGAGCGTTCCCCGGAGAAGATCCT
GGCGCTGGTGGAGGAGACCCTTCGGGCCACCGGTTACGACGAGATATCGCTGCTGTCGCTCTCCACCGGGGACTATGGCT
GCCTTACGCCGTTATTGACCGAACTTATGGCACGTTACGCCTCGGAGCGGATCGCCGTGTCGCTTCCGTCGATGCGGGTG
GGAAGCCTCAACGATGAGCTGGTGGAGGCCATCCGCACCGTTCGCAAGACCGGTTTCACCCTGGCGCCTGAAGCCGGGAG
CGAGCGGCTGCGCCGGGTCATCAACAAGGGAATCTCCGAGGAGGATTTGCTGCGCAATGCCTTTGAGGCGTACTCCCACG
GCTGGCGCCTGATCAAGCTCTACTTCATGATCGGTCTGCCGGGCGAGACGGAGGAGGATCTGCACGGGATCGTGGAGCTT
GCCCGCAAGGTGAAGATGGAGGGGCGGCGGGCCGGTAGCGGAGGCGAGGTGAATGTGTCGGTCTCGACCTTCGTTCCCAA
GGCGCACACCCCCTTCCAGTGGGAGCCCCAGATCCCGGTCGGCGAGATCCTGGAGAAACAGGGACTTCTGCGTCGTGAGC
TCAGGGCGCGCAAGCTGGTTTTCAAGTGGCACGATGCGCCTCTCTCCTTTATGGAAGGGGTCTTCGCCCGGGGCGACCGG
CGGCTTGGGGCCGCCCTTCGCCGGGCGTGGGAACTCGGCTGCCGCTTCGACGGCTGGGGCGACAGGTTCGACGAGGCCGC
ATGGCGGACCGCCTTCGAGGAAACCGGTATCGACCCGGCCTTCTATCATCGGCGCCGGGAGCCGGATGAGGTTCTTCCCT
GGGGTCACCTGGACTTCGGCGTCACAAGGGAGTTTCTTCTTCGCGAACTGGAACTGTCGCGCCAGGGGGCGGCCACGGAG
GACTGCCGTACCGGCCGCTGCACCGGCTGCGGTGTCTGTGATTTCAGCCAGGTGCGGCTGCGGCTCGCCGATGACGGCTG
GCGGGGTACGACCACCCGGCGGGAAAAGGATGATGCGGAAGATGTCGAAGGGAAGGTAACGCTGCGGCTCCGTTACACCA
AGACCGGGGCCATGCGGTTCCTGAGTCACCTGGAGATGATCGGTCTCTTTACCCGGGCGGTGGGGCGGTCGCGAATCCCG
ATCCGCTTCTCCCGCGGGTTCCATCCTCACCCCAAATTCTCATTTGCCACCGCCCTTTCGGTCGGTGTAGAATCGTGGGC
CGAATATCTCGATATGGAGCTTTTCCCCGGCGCCGACCCGACGGACATCGGCACGCGCCTCAATGGGGCTCTCCCCGAGG
GGGTACGGATCGTCGAGGCATCCGTGATCCCTCCGGGCAGTCCTTCCCTCTCTGTAATAATGGACAAAGTGCGCTACCGT
GTTACGCTTCCTCCGGAGGCGGCCGTCGGCCTGCCTGAACTGGCTGCGGCGTTTCTTGCCCGGGAGAGCGTTCCGCTGCG
TCGTGAAAAGAAGGGGCGGGTCCAGGAGTACGACCTGCGCCGGGAGCTGGCCGAACTCACCGTGGAGGGGAACGCCCTGG
AGATGGTGACGGGGCGGGGCAAACCGCTGGAGTTCGTATCGGCCATCACCGGGCTTGCGCCGGAAGCCCTGGCTGAGGCC
AGGATCGAGAAGCTCCAGGTGCTTTTCAAGGAATCGTGA

Upstream 100 bases:

>100_bases
TTACGAATCGGCGAACTTATCCGCAATTCCGGAGATAATCAGAGTGTTAGATAACAGGTTACTTGCCGTCGAGAAGCCGG
CACGCTACATGGGGGGAGAG

Downstream 100 bases:

>100_bases
TTCAATTTTTCATACAGGATACCCATCAATGGCCAATGAACTGGTGATCAACACCTCGTCCCACGAGACCCGCATCGCTC
TCATCGAGAACGGCACCATT

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 812; Mature: 811

Protein sequence:

>812_residues
MGTRCAVTPELRFVLAFPDVYEVGMSHLGLQILYGVLNTLDGVAAERAYAPWPDREAQLRAEGIPLATLESGTSLDRADI
VGFTLQYELSYTNILNMLDLAGIPLLASERDERHPLIIGGGPCACNPEPLADFFDAFLLGDGEEAVIEIAEAFRAWKRAG
GARSGLLERLAGIAGVYVPSFFAVRYGDNNRIAAVEPLRPDYGPVKRRFLAELEPAAYPTAPVVPFLKTIHDRVSVEISR
GCTRGCRFCQAGYLYRPVRERSPEKILALVEETLRATGYDEISLLSLSTGDYGCLTPLLTELMARYASERIAVSLPSMRV
GSLNDELVEAIRTVRKTGFTLAPEAGSERLRRVINKGISEEDLLRNAFEAYSHGWRLIKLYFMIGLPGETEEDLHGIVEL
ARKVKMEGRRAGSGGEVNVSVSTFVPKAHTPFQWEPQIPVGEILEKQGLLRRELRARKLVFKWHDAPLSFMEGVFARGDR
RLGAALRRAWELGCRFDGWGDRFDEAAWRTAFEETGIDPAFYHRRREPDEVLPWGHLDFGVTREFLLRELELSRQGAATE
DCRTGRCTGCGVCDFSQVRLRLADDGWRGTTTRREKDDAEDVEGKVTLRLRYTKTGAMRFLSHLEMIGLFTRAVGRSRIP
IRFSRGFHPHPKFSFATALSVGVESWAEYLDMELFPGADPTDIGTRLNGALPEGVRIVEASVIPPGSPSLSVIMDKVRYR
VTLPPEAAVGLPELAAAFLARESVPLRREKKGRVQEYDLRRELAELTVEGNALEMVTGRGKPLEFVSAITGLAPEALAEA
RIEKLQVLFKES

Sequences:

>Translated_812_residues
MGTRCAVTPELRFVLAFPDVYEVGMSHLGLQILYGVLNTLDGVAAERAYAPWPDREAQLRAEGIPLATLESGTSLDRADI
VGFTLQYELSYTNILNMLDLAGIPLLASERDERHPLIIGGGPCACNPEPLADFFDAFLLGDGEEAVIEIAEAFRAWKRAG
GARSGLLERLAGIAGVYVPSFFAVRYGDNNRIAAVEPLRPDYGPVKRRFLAELEPAAYPTAPVVPFLKTIHDRVSVEISR
GCTRGCRFCQAGYLYRPVRERSPEKILALVEETLRATGYDEISLLSLSTGDYGCLTPLLTELMARYASERIAVSLPSMRV
GSLNDELVEAIRTVRKTGFTLAPEAGSERLRRVINKGISEEDLLRNAFEAYSHGWRLIKLYFMIGLPGETEEDLHGIVEL
ARKVKMEGRRAGSGGEVNVSVSTFVPKAHTPFQWEPQIPVGEILEKQGLLRRELRARKLVFKWHDAPLSFMEGVFARGDR
RLGAALRRAWELGCRFDGWGDRFDEAAWRTAFEETGIDPAFYHRRREPDEVLPWGHLDFGVTREFLLRELELSRQGAATE
DCRTGRCTGCGVCDFSQVRLRLADDGWRGTTTRREKDDAEDVEGKVTLRLRYTKTGAMRFLSHLEMIGLFTRAVGRSRIP
IRFSRGFHPHPKFSFATALSVGVESWAEYLDMELFPGADPTDIGTRLNGALPEGVRIVEASVIPPGSPSLSVIMDKVRYR
VTLPPEAAVGLPELAAAFLARESVPLRREKKGRVQEYDLRRELAELTVEGNALEMVTGRGKPLEFVSAITGLAPEALAEA
RIEKLQVLFKES
>Mature_811_residues
GTRCAVTPELRFVLAFPDVYEVGMSHLGLQILYGVLNTLDGVAAERAYAPWPDREAQLRAEGIPLATLESGTSLDRADIV
GFTLQYELSYTNILNMLDLAGIPLLASERDERHPLIIGGGPCACNPEPLADFFDAFLLGDGEEAVIEIAEAFRAWKRAGG
ARSGLLERLAGIAGVYVPSFFAVRYGDNNRIAAVEPLRPDYGPVKRRFLAELEPAAYPTAPVVPFLKTIHDRVSVEISRG
CTRGCRFCQAGYLYRPVRERSPEKILALVEETLRATGYDEISLLSLSTGDYGCLTPLLTELMARYASERIAVSLPSMRVG
SLNDELVEAIRTVRKTGFTLAPEAGSERLRRVINKGISEEDLLRNAFEAYSHGWRLIKLYFMIGLPGETEEDLHGIVELA
RKVKMEGRRAGSGGEVNVSVSTFVPKAHTPFQWEPQIPVGEILEKQGLLRRELRARKLVFKWHDAPLSFMEGVFARGDRR
LGAALRRAWELGCRFDGWGDRFDEAAWRTAFEETGIDPAFYHRRREPDEVLPWGHLDFGVTREFLLRELELSRQGAATED
CRTGRCTGCGVCDFSQVRLRLADDGWRGTTTRREKDDAEDVEGKVTLRLRYTKTGAMRFLSHLEMIGLFTRAVGRSRIPI
RFSRGFHPHPKFSFATALSVGVESWAEYLDMELFPGADPTDIGTRLNGALPEGVRIVEASVIPPGSPSLSVIMDKVRYRV
TLPPEAAVGLPELAAAFLARESVPLRREKKGRVQEYDLRRELAELTVEGNALEMVTGRGKPLEFVSAITGLAPEALAEAR
IEKLQVLFKES

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 90357; Mature: 90225

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS00197 2FE2S_FER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTRCAVTPELRFVLAFPDVYEVGMSHLGLQILYGVLNTLDGVAAERAYAPWPDREAQLR
CCCCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AEGIPLATLESGTSLDRADIVGFTLQYELSYTNILNMLDLAGIPLLASERDERHPLIIGG
HCCCCEEEECCCCCCCCHHEEEEEEEEEECHHHHHHHHHHCCCCEEECCCCCCCCEEEEC
GPCACNPEPLADFFDAFLLGDGEEAVIEIAEAFRAWKRAGGARSGLLERLAGIAGVYVPS
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
FFAVRYGDNNRIAAVEPLRPDYGPVKRRFLAELEPAAYPTAPVVPFLKTIHDRVSVEISR
EEEEEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEHHH
GCTRGCRFCQAGYLYRPVRERSPEKILALVEETLRATGYDEISLLSLSTGDYGCLTPLLT
CHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
ELMARYASERIAVSLPSMRVGSLNDELVEAIRTVRKTGFTLAPEAGSERLRRVINKGISE
HHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCCCH
EDLLRNAFEAYSHGWRLIKLYFMIGLPGETEEDLHGIVELARKVKMEGRRAGSGGEVNVS
HHHHHHHHHHHHCCHHEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
VSTFVPKAHTPFQWEPQIPVGEILEKQGLLRRELRARKLVFKWHDAPLSFMEGVFARGDR
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCH
RLGAALRRAWELGCRFDGWGDRFDEAAWRTAFEETGIDPAFYHRRREPDEVLPWGHLDFG
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHH
VTREFLLRELELSRQGAATEDCRTGRCTGCGVCDFSQVRLRLADDGWRGTTTRREKDDAE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCCC
DVEGKVTLRLRYTKTGAMRFLSHLEMIGLFTRAVGRSRIPIRFSRGFHPHPKFSFATALS
CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHH
VGVESWAEYLDMELFPGADPTDIGTRLNGALPEGVRIVEASVIPPGSPSLSVIMDKVRYR
HHHHHHHHHHCCEECCCCCCHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHEE
VTLPPEAAVGLPELAAAFLARESVPLRREKKGRVQEYDLRRELAELTVEGNALEMVTGRG
EECCCHHHCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHEECCCEEEEECCCC
KPLEFVSAITGLAPEALAEARIEKLQVLFKES
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GTRCAVTPELRFVLAFPDVYEVGMSHLGLQILYGVLNTLDGVAAERAYAPWPDREAQLR
CCCEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AEGIPLATLESGTSLDRADIVGFTLQYELSYTNILNMLDLAGIPLLASERDERHPLIIGG
HCCCCEEEECCCCCCCCHHEEEEEEEEEECHHHHHHHHHHCCCCEEECCCCCCCCEEEEC
GPCACNPEPLADFFDAFLLGDGEEAVIEIAEAFRAWKRAGGARSGLLERLAGIAGVYVPS
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
FFAVRYGDNNRIAAVEPLRPDYGPVKRRFLAELEPAAYPTAPVVPFLKTIHDRVSVEISR
EEEEEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEHHH
GCTRGCRFCQAGYLYRPVRERSPEKILALVEETLRATGYDEISLLSLSTGDYGCLTPLLT
CHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
ELMARYASERIAVSLPSMRVGSLNDELVEAIRTVRKTGFTLAPEAGSERLRRVINKGISE
HHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCCCH
EDLLRNAFEAYSHGWRLIKLYFMIGLPGETEEDLHGIVELARKVKMEGRRAGSGGEVNVS
HHHHHHHHHHHHCCHHEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
VSTFVPKAHTPFQWEPQIPVGEILEKQGLLRRELRARKLVFKWHDAPLSFMEGVFARGDR
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCH
RLGAALRRAWELGCRFDGWGDRFDEAAWRTAFEETGIDPAFYHRRREPDEVLPWGHLDFG
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHH
VTREFLLRELELSRQGAATEDCRTGRCTGCGVCDFSQVRLRLADDGWRGTTTRREKDDAE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCCC
DVEGKVTLRLRYTKTGAMRFLSHLEMIGLFTRAVGRSRIPIRFSRGFHPHPKFSFATALS
CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHH
VGVESWAEYLDMELFPGADPTDIGTRLNGALPEGVRIVEASVIPPGSPSLSVIMDKVRYR
HHHHHHHHHHCCEECCCCCCHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHEE
VTLPPEAAVGLPELAAAFLARESVPLRREKKGRVQEYDLRRELAELTVEGNALEMVTGRG
EECCCHHHCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHEECCCEEEEECCCC
KPLEFVSAITGLAPEALAEARIEKLQVLFKES
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]