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The map label for this gene is 39998153

Identifier: 39998153

GI number: 39998153

Start: 3366639

End: 3368330

Strand: Reverse

Name: 39998153

Synonym: GSU3062

Alternate gene names: NA

Gene position: 3368330-3366639 (Counterclockwise)

Preceding gene: 39998154

Following gene: 39998150

Centisome position: 88.31

GC content: 62.94

Gene sequence:

>1692_bases
ATGTCGTGGAAAATCATCGAGAAAAACCGCCGTCTCCTGAGCCGGGAGGAGGGCTTTTCCCCCAAGCGGCGCGGTGGCAA
ACTGACCGTCTGCCTGGTCTACCCCAACCGTTATGCCGTGGGGATGAGCAACCTGGGATTCCAGTCGGTTCACGCCCTGT
TGAACGAAGAGCCTGACATCCTCTGTGACCGGGCCTTCCTCCCCGATGCCGATGATCTGCGGGAGTATCGCAGGAGCGGC
ACGAAGCTCCTCTCCCTGGAGTCGGGGGAGCCTCTCGGCTCCTTTGACATCATCGCCTTTTCGGTTTCCTTCGAGAACGA
CTATCTGAACATCCCGGTCATCTTCGACCTGGCCGGCATTCCGCCCCTGGCATCGGAGCGGAGGCCCGCCCATCCCCTCG
TTATGGCCGGAGGCGCGGCCCTGTTCCTCAATCCCGAGCCGGTGGCGGATTTTCTCGACCTGGTCTGCGTGGGGGAGGGG
GAAGAGCTGCTCCAGTCGCTGCTGGAACTGATGCGGGCCGAGGGGATCGTCGAGCGGGAGTCTTTCCTTGCCCGGGCCGC
GCGTCTGCCGGGGATCTATATTCCTGCCTTGTATGACGTGAGCTATGACGGCGTTCGCGTGGCCGGCCGCCGTGCGGGCC
ACGGGGCGCCGGAGCAGGTTGCCCGGTTGATGATGGCTGATCCTGACCGTCGGGAGAGCGTGTCCGGGATTTTGACGCCG
GACACGGAGTTTTCCGACATGTACCTCATGGAGGTCTCCCGGGGGTGCCCCCGCGGATGCCGCTTCTGTGCGGCCGGGTT
CATCTATTTCCCCTACCGCCAGCGCTCCCTTGATGAATTAAAGCGTCAGGCAGTGGAGGGACTGGCCCGTCGTGGGAAGA
TCGGCCTCGTTGGCGCAGCGGTCTCCGATCACCGGGACATCGGCGAACTCTGCCGGTTCATCCTTGAGCAGGGGGGGAAG
GTGTCGGTCTCGTCCCTGCGGATCGACCGGCTCGACGACGGCATGATCGAAGTGCTCAAGGCGAGCGGCCACAAGACGGT
GGCCCTGGCCCCGGAGGGGGGCAGCCAGCGGATGCGTGACCTGGTGCGCAAGAACCTGACCGAAGAGCAGATTCTAGCCG
CCTGCGACCTCCTGATCGGCCACGATATCCTGAACCTGAAGCTCTACTTCATCATCGGCCTCCCCACCGAAACCATGGAC
GACCTGGAGGAAATGACGGCCCTGGTGGGAAAGATCCGCGAACGGGTCATTGATGCTGCCCGGAAGAACAAGCGGCTCGG
GGAGATCATCCTTTCGGTGAATCCCTTTGTACCCAAACCGTTTACCCCGTTCCAGTGGTGCGGCATGGAGGATACGGCTT
CTCTGGAGAAGAAGCTTAAATACCTCCAGCAAGCGGTAGGGAAGCTGTCAAACGTCCGGCTCATTGCCGAGAGCCCCAAG
GACGCCTATCTTCAGGCGCTCCTCTCCCGGGGCGACCGCCGGCTCTCGGCGTTTCTGCTCCGTTCCGCCGAACTGGGGAG
CTGGAAACGGGCCGCCCGGGAGTTCGATGTCGACACCGATTTGCTCGTCTACCGAAACATTCCCCTTGACGAAACGCTGC
CGTGGGACGTCATCGGCAGCGCCGGCGTCGACCGGCTCAGGCGGGAATATCTGGAGGCGTTCCCCCGCCGTGAGGCCGTT
ATCGTTTCTTGA

Upstream 100 bases:

>100_bases
TCTCTGCTTTCATTCCCCGGCTCCCCATTTACCCCCTCCAGGGGGGCCGGGTCTTTTTTCCCTTTTTCCCTCTTCTCCCT
TCGTGGTACCCTGATCCCCC

Downstream 100 bases:

>100_bases
TCCTCTCCAGCCAAGGCAGATGGAGGTCGCCGGGGGATGCATGGCGACGCTCGTCCTGACAGGCCTTTTGTCCTGAGCTG
AGCCGTGAATAGACGCCGAG

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MSWKIIEKNRRLLSREEGFSPKRRGGKLTVCLVYPNRYAVGMSNLGFQSVHALLNEEPDILCDRAFLPDADDLREYRRSG
TKLLSLESGEPLGSFDIIAFSVSFENDYLNIPVIFDLAGIPPLASERRPAHPLVMAGGAALFLNPEPVADFLDLVCVGEG
EELLQSLLELMRAEGIVERESFLARAARLPGIYIPALYDVSYDGVRVAGRRAGHGAPEQVARLMMADPDRRESVSGILTP
DTEFSDMYLMEVSRGCPRGCRFCAAGFIYFPYRQRSLDELKRQAVEGLARRGKIGLVGAAVSDHRDIGELCRFILEQGGK
VSVSSLRIDRLDDGMIEVLKASGHKTVALAPEGGSQRMRDLVRKNLTEEQILAACDLLIGHDILNLKLYFIIGLPTETMD
DLEEMTALVGKIRERVIDAARKNKRLGEIILSVNPFVPKPFTPFQWCGMEDTASLEKKLKYLQQAVGKLSNVRLIAESPK
DAYLQALLSRGDRRLSAFLLRSAELGSWKRAAREFDVDTDLLVYRNIPLDETLPWDVIGSAGVDRLRREYLEAFPRREAV
IVS

Sequences:

>Translated_563_residues
MSWKIIEKNRRLLSREEGFSPKRRGGKLTVCLVYPNRYAVGMSNLGFQSVHALLNEEPDILCDRAFLPDADDLREYRRSG
TKLLSLESGEPLGSFDIIAFSVSFENDYLNIPVIFDLAGIPPLASERRPAHPLVMAGGAALFLNPEPVADFLDLVCVGEG
EELLQSLLELMRAEGIVERESFLARAARLPGIYIPALYDVSYDGVRVAGRRAGHGAPEQVARLMMADPDRRESVSGILTP
DTEFSDMYLMEVSRGCPRGCRFCAAGFIYFPYRQRSLDELKRQAVEGLARRGKIGLVGAAVSDHRDIGELCRFILEQGGK
VSVSSLRIDRLDDGMIEVLKASGHKTVALAPEGGSQRMRDLVRKNLTEEQILAACDLLIGHDILNLKLYFIIGLPTETMD
DLEEMTALVGKIRERVIDAARKNKRLGEIILSVNPFVPKPFTPFQWCGMEDTASLEKKLKYLQQAVGKLSNVRLIAESPK
DAYLQALLSRGDRRLSAFLLRSAELGSWKRAAREFDVDTDLLVYRNIPLDETLPWDVIGSAGVDRLRREYLEAFPRREAV
IVS
>Mature_562_residues
SWKIIEKNRRLLSREEGFSPKRRGGKLTVCLVYPNRYAVGMSNLGFQSVHALLNEEPDILCDRAFLPDADDLREYRRSGT
KLLSLESGEPLGSFDIIAFSVSFENDYLNIPVIFDLAGIPPLASERRPAHPLVMAGGAALFLNPEPVADFLDLVCVGEGE
ELLQSLLELMRAEGIVERESFLARAARLPGIYIPALYDVSYDGVRVAGRRAGHGAPEQVARLMMADPDRRESVSGILTPD
TEFSDMYLMEVSRGCPRGCRFCAAGFIYFPYRQRSLDELKRQAVEGLARRGKIGLVGAAVSDHRDIGELCRFILEQGGKV
SVSSLRIDRLDDGMIEVLKASGHKTVALAPEGGSQRMRDLVRKNLTEEQILAACDLLIGHDILNLKLYFIIGLPTETMDD
LEEMTALVGKIRERVIDAARKNKRLGEIILSVNPFVPKPFTPFQWCGMEDTASLEKKLKYLQQAVGKLSNVRLIAESPKD
AYLQALLSRGDRRLSAFLLRSAELGSWKRAAREFDVDTDLLVYRNIPLDETLPWDVIGSAGVDRLRREYLEAFPRREAVI
VS

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 62857; Mature: 62726

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWKIIEKNRRLLSREEGFSPKRRGGKLTVCLVYPNRYAVGMSNLGFQSVHALLNEEPDI
CCCEEEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHCCCCCC
LCDRAFLPDADDLREYRRSGTKLLSLESGEPLGSFDIIAFSVSFENDYLNIPVIFDLAGI
EECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCEEECEEEEEECCC
PPLASERRPAHPLVMAGGAALFLNPEPVADFLDLVCVGEGEELLQSLLELMRAEGIVERE
CCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHEECCCCHHHHHHHHHHHHHCCCHHHH
SFLARAARLPGIYIPALYDVSYDGVRVAGRRAGHGAPEQVARLMMADPDRRESVSGILTP
HHHHHHHHCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCCHHCCCCEECC
DTEFSDMYLMEVSRGCPRGCRFCAAGFIYFPYRQRSLDELKRQAVEGLARRGKIGLVGAA
CCCCCHHHHHHHHCCCCHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECC
VSDHRDIGELCRFILEQGGKVSVSSLRIDRLDDGMIEVLKASGHKTVALAPEGGSQRMRD
HHCCCCHHHHHHHHHHCCCCEEEHEEEECCCCHHHHHHHHCCCCEEEEECCCCCHHHHHH
LVRKNLTEEQILAACDLLIGHDILNLKLYFIIGLPTETMDDLEEMTALVGKIRERVIDAA
HHHHCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
RKNKRLGEIILSVNPFVPKPFTPFQWCGMEDTASLEKKLKYLQQAVGKLSNVRLIAESPK
HHCCCHHHEEEECCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCH
DAYLQALLSRGDRRLSAFLLRSAELGSWKRAAREFDVDTDLLVYRNIPLDETLPWDVIGS
HHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCC
AGVDRLRREYLEAFPRREAVIVS
CCHHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure 
SWKIIEKNRRLLSREEGFSPKRRGGKLTVCLVYPNRYAVGMSNLGFQSVHALLNEEPDI
CCEEEHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHCCCCCC
LCDRAFLPDADDLREYRRSGTKLLSLESGEPLGSFDIIAFSVSFENDYLNIPVIFDLAGI
EECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCEEECEEEEEECCC
PPLASERRPAHPLVMAGGAALFLNPEPVADFLDLVCVGEGEELLQSLLELMRAEGIVERE
CCCCCCCCCCCCEEEECCEEEEECCCCHHHHHHHEECCCCHHHHHHHHHHHHHCCCHHHH
SFLARAARLPGIYIPALYDVSYDGVRVAGRRAGHGAPEQVARLMMADPDRRESVSGILTP
HHHHHHHHCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCCHHCCCCEECC
DTEFSDMYLMEVSRGCPRGCRFCAAGFIYFPYRQRSLDELKRQAVEGLARRGKIGLVGAA
CCCCCHHHHHHHHCCCCHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECC
VSDHRDIGELCRFILEQGGKVSVSSLRIDRLDDGMIEVLKASGHKTVALAPEGGSQRMRD
HHCCCCHHHHHHHHHHCCCCEEEHEEEECCCCHHHHHHHHCCCCEEEEECCCCCHHHHHH
LVRKNLTEEQILAACDLLIGHDILNLKLYFIIGLPTETMDDLEEMTALVGKIRERVIDAA
HHHHCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
RKNKRLGEIILSVNPFVPKPFTPFQWCGMEDTASLEKKLKYLQQAVGKLSNVRLIAESPK
HHCCCHHHEEEECCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCH
DAYLQALLSRGDRRLSAFLLRSAELGSWKRAAREFDVDTDLLVYRNIPLDETLPWDVIGS
HHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHCC
AGVDRLRREYLEAFPRREAVIVS
CCHHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]