| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is cobU [H]
Identifier: 39998101
GI number: 39998101
Start: 3302370
End: 3302888
Strand: Reverse
Name: cobU [H]
Synonym: GSU3010
Alternate gene names: 39998101
Gene position: 3302888-3302370 (Counterclockwise)
Preceding gene: 39998102
Following gene: 39998100
Centisome position: 86.6
GC content: 64.93
Gene sequence:
>519_bases ATGGCACAGATCATTTTCTTAACGGGCGGCGCCCGTAGCGGCAAAAGCCGCTTGGCCGAAGAACTGGCAACCAGGCGGGG TACTCCCCTCGGCTACCTGGCCACCGGCTCTGCCGGTGACGGGGAGATGGCCGAGCGGATCGCCCGGCACCGGGAGCGCC GCGGCGATGCCTGGACCACCATCGAAGAACCCCTGGCCCTTGCCGAGTCCCTGGCGGCCCATGACGGCCGGTTCGCCGCA ATCCTCGTGGATTGCGTCACCCTCTGGCTCTCCAATCTCCTCTTTTCCCTGGACGATCCAGCCCGCGTGCTCAAAGAAGT CGAACTATTGACACGGACATTCTCCTCCCTCCGGACTCCGCTCATCATCGTATCCAACGAGGTGGGCATGGGGATAGTGC CGGAGAACCGCCTGGCGCGCCAGTTCCGTGACCTGGCCGGCGAGGCCAACGAGCGGATCGCCGCCGCGGCCGACGAAGTC TATGTGACATTCAGCGGGCTCCCGCTACGCCTGAAATGA
Upstream 100 bases:
>100_bases GCATGAGCAGCGGCCTCCGAGGAAGAGGTGCCGAAGCCATCGTCAATTCATCCACGGTATTCGAGCCCCGCCCCTTGTCA GGAGGCGGGGTTTTTCATTC
Downstream 100 bases:
>100_bases ACCCTGAAAGACGAGGTACCCCATGACGCTGCTGACCGAAGCCCTGTCAAAAATATGTCCCGTAGATGCCGAACTCATGG CCCAGGCCCAGGCGCGGCTT
Product: bifunctional cobalamin biosynthesis protein CobU
Products: NA
Alternate protein names: Adenosylcobinamide kinase; Adenosylcobinamide-phosphate guanylyltransferase [H]
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MAQIIFLTGGARSGKSRLAEELATRRGTPLGYLATGSAGDGEMAERIARHRERRGDAWTTIEEPLALAESLAAHDGRFAA ILVDCVTLWLSNLLFSLDDPARVLKEVELLTRTFSSLRTPLIIVSNEVGMGIVPENRLARQFRDLAGEANERIAAAADEV YVTFSGLPLRLK
Sequences:
>Translated_172_residues MAQIIFLTGGARSGKSRLAEELATRRGTPLGYLATGSAGDGEMAERIARHRERRGDAWTTIEEPLALAESLAAHDGRFAA ILVDCVTLWLSNLLFSLDDPARVLKEVELLTRTFSSLRTPLIIVSNEVGMGIVPENRLARQFRDLAGEANERIAAAADEV YVTFSGLPLRLK >Mature_171_residues AQIIFLTGGARSGKSRLAEELATRRGTPLGYLATGSAGDGEMAERIARHRERRGDAWTTIEEPLALAESLAAHDGRFAAI LVDCVTLWLSNLLFSLDDPARVLKEVELLTRTFSSLRTPLIIVSNEVGMGIVPENRLARQFRDLAGEANERIAAAADEVY VTFSGLPLRLK
Specific function: Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate [H]
COG id: COG2087
COG function: function code H; Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788302, Length=181, Percent_Identity=41.4364640883978, Blast_Score=129, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003203 [H]
Pfam domain/function: PF02283 CobU [H]
EC number: =2.7.1.156; =2.7.7.62 [H]
Molecular weight: Translated: 18763; Mature: 18632
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQIIFLTGGARSGKSRLAEELATRRGTPLGYLATGSAGDGEMAERIARHRERRGDAWTT CCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHH IEEPLALAESLAAHDGRFAAILVDCVTLWLSNLLFSLDDPARVLKEVELLTRTFSSLRTP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC LIIVSNEVGMGIVPENRLARQFRDLAGEANERIAAAADEVYVTFSGLPLRLK EEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCEEEEEECCCEEEEC >Mature Secondary Structure AQIIFLTGGARSGKSRLAEELATRRGTPLGYLATGSAGDGEMAERIARHRERRGDAWTT CEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHH IEEPLALAESLAAHDGRFAAILVDCVTLWLSNLLFSLDDPARVLKEVELLTRTFSSLRTP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC LIIVSNEVGMGIVPENRLARQFRDLAGEANERIAAAADEVYVTFSGLPLRLK EEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCEEEEEECCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1655697; 1655696 [H]