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The map label for this gene is ykoX [H]

Identifier: 39998067

GI number: 39998067

Start: 3269006

End: 3269602

Strand: Direct

Name: ykoX [H]

Synonym: GSU2976

Alternate gene names: 39998067

Gene position: 3269006-3269602 (Clockwise)

Preceding gene: 39998061

Following gene: 39998079

Centisome position: 85.71

GC content: 61.47

Gene sequence:

>597_bases
ATGCATCAAGCCATCGACTGGCTCGTCGCCACCATCGGCGCCATGGGCTACCCGGGCATCTTCATCCTCATGGCCATGGA
GAGTTCGGTCTTCCCGGTGCCCAGCGAACTGGTCATGCCCCCGGCCGGCTATCTCGCCCAGCAGGGCGAGATGAACATCT
GGCTCGCCATCTTCCTGGGAACCGCGGGGAGCCTCGCCGGGGCCTATGCCAACTACTTCGCCGCCCACTACCTGGGACGG
CCGCTCCTGCTCAAGTACGGGAAATATGTCTGGATTACCGAGGAGAAATTCGCTCGGGTCGAGTCATTCTTCCACAAGCA
CGGGGAGATTTCAACCTTCATCGGGCGCCTGCTGCCGGTGGTCCGGCACCTTATTTCCCTCCCCGCGGGCCTGGCCGGGA
TGCACCACGGCACGTTCACCCTCTACACCCTGCTGGGAGCCTTCATCTGGTGTACCATCCTCGCCTGGATCGGCTACGTC
ATCGGCGAGAACCGCGACCTGATCATGGAGTATTCCCACCAGGCCCTCATCGGAGTAGTGATCTTCAGCGTGGCTCTGGT
AGCAGTCTATGTGTGGAGGCACCGGCGAAAGAAGTAA

Upstream 100 bases:

>100_bases
TGCTTCTTCATTGCCGCTCCTGCTCTTTTTGTGGCTCCGGCACCGTTTCCGTGGTATAGAGGTGTGCTTTCACACTCCAG
CGACACGAGGTTCGACCGCC

Downstream 100 bases:

>100_bases
GCGCATCGGCGCCAGTGAATGAAAAGCCCCGGCAATGGACAGCATCGCCGGGGCTTTTTTGCATGGTGCACTGCACTTCT
CCCCTTACTTGGGCACGCTT

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MHQAIDWLVATIGAMGYPGIFILMAMESSVFPVPSELVMPPAGYLAQQGEMNIWLAIFLGTAGSLAGAYANYFAAHYLGR
PLLLKYGKYVWITEEKFARVESFFHKHGEISTFIGRLLPVVRHLISLPAGLAGMHHGTFTLYTLLGAFIWCTILAWIGYV
IGENRDLIMEYSHQALIGVVIFSVALVAVYVWRHRRKK

Sequences:

>Translated_198_residues
MHQAIDWLVATIGAMGYPGIFILMAMESSVFPVPSELVMPPAGYLAQQGEMNIWLAIFLGTAGSLAGAYANYFAAHYLGR
PLLLKYGKYVWITEEKFARVESFFHKHGEISTFIGRLLPVVRHLISLPAGLAGMHHGTFTLYTLLGAFIWCTILAWIGYV
IGENRDLIMEYSHQALIGVVIFSVALVAVYVWRHRRKK
>Mature_198_residues
MHQAIDWLVATIGAMGYPGIFILMAMESSVFPVPSELVMPPAGYLAQQGEMNIWLAIFLGTAGSLAGAYANYFAAHYLGR
PLLLKYGKYVWITEEKFARVESFFHKHGEISTFIGRLLPVVRHLISLPAGLAGMHHGTFTLYTLLGAFIWCTILAWIGYV
IGENRDLIMEYSHQALIGVVIFSVALVAVYVWRHRRKK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789481, Length=167, Percent_Identity=25.748502994012, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788656, Length=192, Percent_Identity=22.9166666666667, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22162; Mature: 22162

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQAIDWLVATIGAMGYPGIFILMAMESSVFPVPSELVMPPAGYLAQQGEMNIWLAIFLG
CCHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCCHHHCCCCCHHHHCCCCCCEEEEEEEC
TAGSLAGAYANYFAAHYLGRPLLLKYGKYVWITEEKFARVESFFHKHGEISTFIGRLLPV
CCHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH
VRHLISLPAGLAGMHHGTFTLYTLLGAFIWCTILAWIGYVIGENRDLIMEYSHQALIGVV
HHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IFSVALVAVYVWRHRRKK
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHQAIDWLVATIGAMGYPGIFILMAMESSVFPVPSELVMPPAGYLAQQGEMNIWLAIFLG
CCHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCCHHHCCCCCHHHHCCCCCCEEEEEEEC
TAGSLAGAYANYFAAHYLGRPLLLKYGKYVWITEEKFARVESFFHKHGEISTFIGRLLPV
CCHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH
VRHLISLPAGLAGMHHGTFTLYTLLGAFIWCTILAWIGYVIGENRDLIMEYSHQALIGVV
HHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IFSVALVAVYVWRHRRKK
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]