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The map label for this gene is hoxY [H]

Identifier: 39997813

GI number: 39997813

Start: 2996388

End: 2996975

Strand: Reverse

Name: hoxY [H]

Synonym: GSU2719

Alternate gene names: 39997813

Gene position: 2996975-2996388 (Counterclockwise)

Preceding gene: 39997814

Following gene: 39997812

Centisome position: 78.58

GC content: 65.99

Gene sequence:

>588_bases
ATGACGCCGTCTGGGGGGATAACACGGGGTGCGCCCGGAGGAATGGAACTGATCGGCAGCGGCCGGCTCCGGCTTGCCAC
GGTCTGGCTGGGAGGCTGCTCGGGGTGCCACATGAGCTTCCTCGACCTGGATGAGTATCTCCTGGAACTGTCCCAGGCGG
CCGACCTGGTCTACGGGCCGTTCGTGGATGCCAAGGAATTCCCGGCGGGCGTGGATGTGGCGTTGGTGGAGGGGGCGGTA
ACCAATCGTGCGAATCTGGCCATGGCCGGTATCATCCGTCAGCGGAGCCGGACCGTGATCAGTTTCGGCGACTGCGCCAT
CACCGGTAACGTTACTGCCATGCGCAACCTTCTCACCGTTGCCGAGACCCTGGATCCCTTTCGCTGTGACGGCGAGGCCT
CGCCCGCCTTCGACTATGCGGCAGTGCCCCAGCTTCTGCCGCGGGCCCTGCCGCTCCACCAGGTGATTCCGGTGGACGGC
TACATTCCCGGCTGTCCGCCTGGCCCGGACCGGATCCGGGCAGCCATTGAATGCATGCTGCGGGGAGAGCCGGTACACCT
GGCCCCCGGCATGCTCACGTTCGGATAG

Upstream 100 bases:

>100_bases
GTGCCCTGTTCCTCAAGGGGGCGGTGGTCGGCGAGATGGTCAAGGACCCGACCATGCTCGCCCGGGTGCTGGAAGGGCGG
GAGAAAAAGGAGTGGGAAGG

Downstream 100 bases:

>100_bases
GTATCTCCATGTCCCGCACCATAACCATAGATCCCGTCACCCGTATCGAAGGGCACGCGACCATCACCATCCGGCTCAAC
GATGCCGGTGCCGTGGCCGA

Product: NAD-reducing hydrogenase subunit delta

Products: H+; NADH

Alternate protein names: Methyl viologen-reducing hydrogenase subunit gamma; MVH subunit G [H]

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MTPSGGITRGAPGGMELIGSGRLRLATVWLGGCSGCHMSFLDLDEYLLELSQAADLVYGPFVDAKEFPAGVDVALVEGAV
TNRANLAMAGIIRQRSRTVISFGDCAITGNVTAMRNLLTVAETLDPFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDG
YIPGCPPGPDRIRAAIECMLRGEPVHLAPGMLTFG

Sequences:

>Translated_195_residues
MTPSGGITRGAPGGMELIGSGRLRLATVWLGGCSGCHMSFLDLDEYLLELSQAADLVYGPFVDAKEFPAGVDVALVEGAV
TNRANLAMAGIIRQRSRTVISFGDCAITGNVTAMRNLLTVAETLDPFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDG
YIPGCPPGPDRIRAAIECMLRGEPVHLAPGMLTFG
>Mature_194_residues
TPSGGITRGAPGGMELIGSGRLRLATVWLGGCSGCHMSFLDLDEYLLELSQAADLVYGPFVDAKEFPAGVDVALVEGAVT
NRANLAMAGIIRQRSRTVISFGDCAITGNVTAMRNLLTVAETLDPFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGY
IPGCPPGPDRIRAAIECMLRGEPVHLAPGMLTFG

Specific function: Part of a complex that provides reducing equivalents for heterodisulfide reductase [H]

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: 1.12.1.2

Molecular weight: Translated: 20538; Mature: 20407

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSGGITRGAPGGMELIGSGRLRLATVWLGGCSGCHMSFLDLDEYLLELSQAADLVYGP
CCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEECC
FVDAKEFPAGVDVALVEGAVTNRANLAMAGIIRQRSRTVISFGDCAITGNVTAMRNLLTV
CCCHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCEEEECCHHHHHHHHHH
AETLDPFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGYIPGCPPGPDRIRAAIECML
HHHCCCEECCCCCCCCCCHHHHHHHHHHHCCHHHEECCCCCCCCCCCCHHHHHHHHHHHH
RGEPVHLAPGMLTFG
CCCCEEECCCCEECC
>Mature Secondary Structure 
TPSGGITRGAPGGMELIGSGRLRLATVWLGGCSGCHMSFLDLDEYLLELSQAADLVYGP
CCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEECC
FVDAKEFPAGVDVALVEGAVTNRANLAMAGIIRQRSRTVISFGDCAITGNVTAMRNLLTV
CCCHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCEEEECCHHHHHHHHHH
AETLDPFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGYIPGCPPGPDRIRAAIECML
HHHCCCEECCCCCCCCCCHHHHHHHHHHHCCHHHEECCCCCCCCCCCCHHHHHHHHHHHH
RGEPVHLAPGMLTFG
CCCCEEECCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2; NAD+

Specific reaction: H2 + NAD+ = H+ + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2654933; 9371463 [H]