| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is hoxH [H]
Identifier: 39997812
GI number: 39997812
Start: 2994943
End: 2996379
Strand: Reverse
Name: hoxH [H]
Synonym: GSU2718
Alternate gene names: 39997812
Gene position: 2996379-2994943 (Counterclockwise)
Preceding gene: 39997813
Following gene: 39997811
Centisome position: 78.56
GC content: 66.88
Gene sequence:
>1437_bases ATGTCCCGCACCATAACCATAGATCCCGTCACCCGTATCGAAGGGCACGCGACCATCACCATCCGGCTCAACGATGCCGG TGCCGTGGCCGATGCTAGGTTTCACGTGACCGAATTCCGCGGGTTCGAGCGGATATGCATCGGCCGCAGCATCTGGGAGA TGCCCGGCATCACCGCCCGCATCTGCGGCATCTGCCCCGTGAGCCACTCCATCTCCGCTGCCCGTGCCGGCGATGCCATC CTCGGCGTGGAGATTCCCCCGGCCGCAGTCCACCTGCGCCGGATCGCCAATCTGGCCTCTCTCATCCAGAGCCATGCCCT GAGCTTCTTCCACCTCTCCGCCGCCGATCTTCTCATGGGTATGGACGAGGAGCCCTCCCGCCGCAACCTCTGGGGCCTGG TGGCGCACCACCCGGAGGTGGCCCGCGGCGGCATCCGTCTCCGTCAGATCGGCCAGAAGATCGTAAGCGACGTGGCCGGA GAGAGCATCCATCCCTCCTGGGCGGTGCCGGGCGGAGTCCGTGAGCCGCTCTCCCCGGAAGGCCGGGACCGGATCGCCGC GCTTCTGCCCGAGGGGCTCGCCATCGTCCGGGGCGCCCTGGGCATGCTTGACGGCATCTACGCCCGCCACGAAGCCGAAA TAACCGCGTATGGGGACTTTCCCTCGCTCTTCGCGGGGCTGACGGCATCTGACGGCGGTCTGGAGCACTACGACGGCTCC CTCCGCTTCACCGATTCGGCAGGCGTCCACGTGGATGAGCTTTCCCCGGAGCACTACGCCCAGGCCGTAACCGAGCGGGC CGAGCCCTGGAGCTACATGACCTTCCCCTACTACCATCCCCATGGCGACCGGGAAGGGGGGGGGATGTTCCGGGTGGGGC CCCTGGCCCGGTTAAATATCTGCGACCGCGCCGGGACCCCCGAGGCCGACCGCGAACTTGCCGCGTTCCGGCAGGTGCGC GGCGCCGGCGGCATGGTCACCGGCAGTTTCCACTACCACCATGCCCGGCTCATCGAGATCCTCCACGCCCTGGAGCGGAT CGGGATGCTCCTGGACGAGCCGGACATCCTGGATCGCCACGTCCGGAGCGAGGCCGGAGTGAATCGGCCGGCCGGTGTCG GCTTCTGCGAAGCGCCCCGCGGCACCCTCTTTCATGACTACGAGGTGGATGACGACGGCATTGTCAGCCGTGTGAACCTG CTTATCGCCACCGGCATGAACAATCTGGCCATTAACCGGACCATCCGGCAGGTGGCGGCGGAGTTCATCAGGGGAGGGGA GTTCACGGAAGGGATTCTCAACCGGATCGAGCACGGTGTGCGGGCCTATGATCCCTGCCTTTCCTGCGCCACGCATGCCT ACGGCAGGATGCCGCTGCGGGTGATGCTCCTGGGGCCGGACGGGACGGTGCTGGATGAGGCGAAACGGGGAAGATAG
Upstream 100 bases:
>100_bases CGCCTGGCCCGGACCGGATCCGGGCAGCCATTGAATGCATGCTGCGGGGAGAGCCGGTACACCTGGCCCCCGGCATGCTC ACGTTCGGATAGGTATCTCC
Downstream 100 bases:
>100_bases CGAGAGGGGCAGGTCATGGTCCTGCTGATCGGCTACGGCAATCGCCTGCGGCGCGACGATGGGGCCGGGGCGGTCCTTCC TGCGATGGTGGAGGGGGGCT
Product: NAD-reducing hydrogenase subunit beta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 478; Mature: 477
Protein sequence:
>478_residues MSRTITIDPVTRIEGHATITIRLNDAGAVADARFHVTEFRGFERICIGRSIWEMPGITARICGICPVSHSISAARAGDAI LGVEIPPAAVHLRRIANLASLIQSHALSFFHLSAADLLMGMDEEPSRRNLWGLVAHHPEVARGGIRLRQIGQKIVSDVAG ESIHPSWAVPGGVREPLSPEGRDRIAALLPEGLAIVRGALGMLDGIYARHEAEITAYGDFPSLFAGLTASDGGLEHYDGS LRFTDSAGVHVDELSPEHYAQAVTERAEPWSYMTFPYYHPHGDREGGGMFRVGPLARLNICDRAGTPEADRELAAFRQVR GAGGMVTGSFHYHHARLIEILHALERIGMLLDEPDILDRHVRSEAGVNRPAGVGFCEAPRGTLFHDYEVDDDGIVSRVNL LIATGMNNLAINRTIRQVAAEFIRGGEFTEGILNRIEHGVRAYDPCLSCATHAYGRMPLRVMLLGPDGTVLDEAKRGR
Sequences:
>Translated_478_residues MSRTITIDPVTRIEGHATITIRLNDAGAVADARFHVTEFRGFERICIGRSIWEMPGITARICGICPVSHSISAARAGDAI LGVEIPPAAVHLRRIANLASLIQSHALSFFHLSAADLLMGMDEEPSRRNLWGLVAHHPEVARGGIRLRQIGQKIVSDVAG ESIHPSWAVPGGVREPLSPEGRDRIAALLPEGLAIVRGALGMLDGIYARHEAEITAYGDFPSLFAGLTASDGGLEHYDGS LRFTDSAGVHVDELSPEHYAQAVTERAEPWSYMTFPYYHPHGDREGGGMFRVGPLARLNICDRAGTPEADRELAAFRQVR GAGGMVTGSFHYHHARLIEILHALERIGMLLDEPDILDRHVRSEAGVNRPAGVGFCEAPRGTLFHDYEVDDDGIVSRVNL LIATGMNNLAINRTIRQVAAEFIRGGEFTEGILNRIEHGVRAYDPCLSCATHAYGRMPLRVMLLGPDGTVLDEAKRGR >Mature_477_residues SRTITIDPVTRIEGHATITIRLNDAGAVADARFHVTEFRGFERICIGRSIWEMPGITARICGICPVSHSISAARAGDAIL GVEIPPAAVHLRRIANLASLIQSHALSFFHLSAADLLMGMDEEPSRRNLWGLVAHHPEVARGGIRLRQIGQKIVSDVAGE SIHPSWAVPGGVREPLSPEGRDRIAALLPEGLAIVRGALGMLDGIYARHEAEITAYGDFPSLFAGLTASDGGLEHYDGSL RFTDSAGVHVDELSPEHYAQAVTERAEPWSYMTFPYYHPHGDREGGGMFRVGPLARLNICDRAGTPEADRELAAFRQVRG AGGMVTGSFHYHHARLIEILHALERIGMLLDEPDILDRHVRSEAGVNRPAGVGFCEAPRGTLFHDYEVDDDGIVSRVNLL IATGMNNLAINRTIRQVAAEFIRGGEFTEGILNRIEHGVRAYDPCLSCATHAYGRMPLRVMLLGPDGTVLDEAKRGR
Specific function: This Is One Of Three E.Coli Hydrogenases Synthesized In Response To Different Physiological Conditions. Hyd2 Is Involved In Hydrogen Uptake. [C]
COG id: COG3259
COG function: function code C; Coenzyme F420-reducing hydrogenase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family [H]
Homologues:
Organism=Escherichia coli, GI1789368, Length=557, Percent_Identity=23.6983842010772, Blast_Score=112, Evalue=7e-26, Organism=Escherichia coli, GI1787207, Length=120, Percent_Identity=30.8333333333333, Blast_Score=74, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001501 - InterPro: IPR018194 [H]
Pfam domain/function: PF00374 NiFeSe_Hases [H]
EC number: =1.12.1.2 [H]
Molecular weight: Translated: 52058; Mature: 51927
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: PS00508 NI_HGENASE_L_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRTITIDPVTRIEGHATITIRLNDAGAVADARFHVTEFRGFERICIGRSIWEMPGITAR CCCEEEECCCCEECCCEEEEEEECCCCCEECCEEEHHHHCCCHHHHHCCHHHHCCCCHHH ICGICPVSHSISAARAGDAILGVEIPPAAVHLRRIANLASLIQSHALSFFHLSAADLLMG HHCCCCCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC MDEEPSRRNLWGLVAHHPEVARGGIRLRQIGQKIVSDVAGESIHPSWAVPGGVREPLSPE CCCCCCCCCHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC GRDRIAALLPEGLAIVRGALGMLDGIYARHEAEITAYGDFPSLFAGLTASDGGLEHYDGS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCCCCCCC LRFTDSAGVHVDELSPEHYAQAVTERAEPWSYMTFPYYHPHGDREGGGMFRVGPLARLNI EEEECCCCCEECCCCHHHHHHHHHHHCCCCCEEECCEECCCCCCCCCCEEEECCCCEEEE CDRAGTPEADRELAAFRQVRGAGGMVTGSFHYHHARLIEILHALERIGMLLDEPDILDRH CCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH VRSEAGVNRPAGVGFCEAPRGTLFHDYEVDDDGIVSRVNLLIATGMNNLAINRTIRQVAA HHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHEECCCCCHHHHHHHHHHHH EFIRGGEFTEGILNRIEHGVRAYDPCLSCATHAYGRMPLRVMLLGPDGTVLDEAKRGR HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCC >Mature Secondary Structure SRTITIDPVTRIEGHATITIRLNDAGAVADARFHVTEFRGFERICIGRSIWEMPGITAR CCEEEECCCCEECCCEEEEEEECCCCCEECCEEEHHHHCCCHHHHHCCHHHHCCCCHHH ICGICPVSHSISAARAGDAILGVEIPPAAVHLRRIANLASLIQSHALSFFHLSAADLLMG HHCCCCCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC MDEEPSRRNLWGLVAHHPEVARGGIRLRQIGQKIVSDVAGESIHPSWAVPGGVREPLSPE CCCCCCCCCHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC GRDRIAALLPEGLAIVRGALGMLDGIYARHEAEITAYGDFPSLFAGLTASDGGLEHYDGS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCCCCCCCCCC LRFTDSAGVHVDELSPEHYAQAVTERAEPWSYMTFPYYHPHGDREGGGMFRVGPLARLNI EEEECCCCCEECCCCHHHHHHHHHHHCCCCCEEECCEECCCCCCCCCCEEEECCCCEEEE CDRAGTPEADRELAAFRQVRGAGGMVTGSFHYHHARLIEILHALERIGMLLDEPDILDRH CCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH VRSEAGVNRPAGVGFCEAPRGTLFHDYEVDDDGIVSRVNLLIATGMNNLAINRTIRQVAA HHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHEECCCCCHHHHHHHHHHHH EFIRGGEFTEGILNRIEHGVRAYDPCLSCATHAYGRMPLRVMLLGPDGTVLDEAKRGR HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2188945; 12948488; 2496982 [H]