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The map label for this gene is 39997709

Identifier: 39997709

GI number: 39997709

Start: 2885565

End: 2886155

Strand: Reverse

Name: 39997709

Synonym: GSU2615

Alternate gene names: NA

Gene position: 2886155-2885565 (Counterclockwise)

Preceding gene: 39997710

Following gene: 39997708

Centisome position: 75.67

GC content: 60.58

Gene sequence:

>591_bases
ATGAACAAGGAAACCTTGCTTGCCGCAGTTGTGGCTCTCGTCGTGGGACTCCTGGGCGGTTACCTGGTGTTCAGCATCAG
TGGGTCCAAGAACCCGGCGCCGGCCGGCGGGATGGCGGGGGGGGGAGCTCCCATGGTGAACTATGAGGAGCGGATCGCCC
AGACCGTCAAAGTCGTGGCCCAGGACCCGAAGAATCTCCAGGCCTGGGTCCAGCTGGGCAATGACTACTTCGACACCAAT
CAGCCGCAGAAGGCCATCGAAGCCTACGGCAAGGCCCTGGAGCTCAAGCCGAACGATCCCAACATCCTTACCGACCAGGC
GATCATGTACCGGGCAGTGGGCTGGTTCGACAAGGCGGTCACTAACCTGGAAGCAGCAATGAAGGTCGATCCGAAGCATG
TTCAGAGTCTGTTCAACCTGGGCATCATCTACATGGAAGACCTGAAGCAGCCCGCCAAGGCTGTCGAATACTGGAAACGC
TATCTCGACCTGGATCCCGCGAGCCCCAACGCCCAGCGGGTCAGGATGATGATGGAACAGGCGCAACAGGTCCAGCCCAG
CTCTTCGGCACCGGGCCCCATGTTCCGCTAG

Upstream 100 bases:

>100_bases
ATCATCGTCGGTGTATATTCATCCGTGTTCGTGGCGAGCCCCATTGTCGTGATCTGGGGGTCGCGGAACAAGGAAACCAA
GGCCTAGGGGGAGACAGTAT

Downstream 100 bases:

>100_bases
GCCGCACACCTCATCCCCGCTCCGGCGGGGATTTTTTTCGCGCGGACGGTCGCGAGGAGCCATGCACGCGGGCAACGAAA
AAGTCTGGACCATACGGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; TPR Domain Protein; TPR Domain-Containing Protein; Tetratricopeptide Domain-Containing Protein; Polysaccharide Deacetylase; Peroxisomal Targeting Signal Type 1 Receptor; Sugar Transporter Superfamily Protein

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNKETLLAAVVALVVGLLGGYLVFSISGSKNPAPAGGMAGGGAPMVNYEERIAQTVKVVAQDPKNLQAWVQLGNDYFDTN
QPQKAIEAYGKALELKPNDPNILTDQAIMYRAVGWFDKAVTNLEAAMKVDPKHVQSLFNLGIIYMEDLKQPAKAVEYWKR
YLDLDPASPNAQRVRMMMEQAQQVQPSSSAPGPMFR

Sequences:

>Translated_196_residues
MNKETLLAAVVALVVGLLGGYLVFSISGSKNPAPAGGMAGGGAPMVNYEERIAQTVKVVAQDPKNLQAWVQLGNDYFDTN
QPQKAIEAYGKALELKPNDPNILTDQAIMYRAVGWFDKAVTNLEAAMKVDPKHVQSLFNLGIIYMEDLKQPAKAVEYWKR
YLDLDPASPNAQRVRMMMEQAQQVQPSSSAPGPMFR
>Mature_196_residues
MNKETLLAAVVALVVGLLGGYLVFSISGSKNPAPAGGMAGGGAPMVNYEERIAQTVKVVAQDPKNLQAWVQLGNDYFDTN
QPQKAIEAYGKALELKPNDPNILTDQAIMYRAVGWFDKAVTNLEAAMKVDPKHVQSLFNLGIIYMEDLKQPAKAVEYWKR
YLDLDPASPNAQRVRMMMEQAQQVQPSSSAPGPMFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21500; Mature: 21500

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKETLLAAVVALVVGLLGGYLVFSISGSKNPAPAGGMAGGGAPMVNYEERIAQTVKVVA
CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
QDPKNLQAWVQLGNDYFDTNQPQKAIEAYGKALELKPNDPNILTDQAIMYRAVGWFDKAV
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
TNLEAAMKVDPKHVQSLFNLGIIYMEDLKQPAKAVEYWKRYLDLDPASPNAQRVRMMMEQ
HHHHHHHCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
AQQVQPSSSAPGPMFR
HHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNKETLLAAVVALVVGLLGGYLVFSISGSKNPAPAGGMAGGGAPMVNYEERIAQTVKVVA
CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
QDPKNLQAWVQLGNDYFDTNQPQKAIEAYGKALELKPNDPNILTDQAIMYRAVGWFDKAV
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
TNLEAAMKVDPKHVQSLFNLGIIYMEDLKQPAKAVEYWKRYLDLDPASPNAQRVRMMMEQ
HHHHHHHCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
AQQVQPSSSAPGPMFR
HHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA