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The map label for this gene is yciR [C]

Identifier: 39997629

GI number: 39997629

Start: 2796313

End: 2797671

Strand: Reverse

Name: yciR [C]

Synonym: GSU2534

Alternate gene names: 39997629

Gene position: 2797671-2796313 (Counterclockwise)

Preceding gene: 39997630

Following gene: 39997628

Centisome position: 73.35

GC content: 64.83

Gene sequence:

>1359_bases
ATGGCCGAATCACGTCCGATCCGGATTCTGTACATGGAGGACAACCCCGCTCTCGCCCGGCTGCTCCAGAAGAGCCTGCT
GCGCAAGGGGTACCAGGTTGATGTCGTTGCCGATGGCGCGGCCGGGCTTACCGTGCTTGAAGGGACCTCCTACGATCTGA
TTCTGGCGGACTACGATATGCCCGTCTGCGGCGGCATCGAGGTGATTGCCACCCTTGCGGCCAGGGGTGTCGATATCCCC
GTCATCATGGTTACGGGCAACGGAAGCGAGAAGGTGGCAGTGGAAGCCCTCAAGCAGGGGGCGGCGGACTACGTGGTGAA
GGACCTGGAGATGGGGTACATCGAACTGCTCCCCATCGTGATCGAGCAGGTCCTGACCCGGCAGGAACTGCTCCGGGAAA
AGGAATTGATGGCCGAGATGATCCGCGACCGGGAGGAGCGCTATCGCCGCTTGGTGGAGTTGTCGCCCGACGGCATCGCC
ATCCACGTGGGGGACCGGATCGCCTTCATCAATGCCGCGGGGGCCCGCCTGCTGGGGGCATCCGATCCGACGGGGGTGAT
CGGCCGGCGGGTAGCGGACCTGGTGTCCCCCGATTACCTCTGCCTGGTCCGCGACCAGCTCGCGTCGGAATCCACCGGCT
CCGATGCCGTGCCCTGGTTCGAGGAACGGCTCACCCTCCCCGGTGGCCGAGCCGTCGACGTTGAACTGGCGGCAGTCCCC
TTTTCCCACGAGGGGGAAGAGGCGTTACAGGTTATTATTCGTGATATAACGGAAAAGAAGCTGGCGAAAAGACGACTGGA
GTTCCTGGCTCACCACGATCCCCTCACCGGCCTGGCCAACCGGGTGCTGTTTTTCGACCGCCTCGACGTGAGCCTGCGCC
AGGCCGAGCGGGACCGGCAGTGTGCCGCGCTCCTCTTCATAGACCTGGACCATTTCAAGGGAGTGAACGATGTCTTCGGC
CACGACGCCGGCGACGTGCTCCTGATGGAGGCGGCCAGGCGCATCGAATCATGCCTGCGCAAGGCCGACTCGGTGGCCCG
GATGGGGGGGGACGAATTCACCGTCATCCTCACCCGGGTTTCAGGCGAAGCCGACGCGGCCATGGTGGCGGGCAAGATCA
TCGAAGCACTGGCCGTGCCGGTAGCGCTCGCCGGCGGCGAATGTACCGTCGGGGCCAGTATCGGCATCAGCATGTATCCC
CTCGATGCGGCCGATGCGGAAAGCCTGCTCAGAAAGGCCGACGCGGCCATGTACCGGGCCAAGCGCCTCGGGAAAAACCG
TTTCGCCTTCGCGATGCACGATCCCTGCGCCGGGGCGGTAGACGCTGCGCCGCAGGCGTGTGCCGGATCCCCGTGCTAG

Upstream 100 bases:

>100_bases
ACGATTAGCGCTGGCGAATGAATAGGTCTATATTTTGCATATTTATATATTAATTCAATCGTCAAGCGCTGGGTACGACA
CGACACGATGAGGTGGGCCA

Downstream 100 bases:

>100_bases
GGAGCTGCCGTCATATGTCCATTGTTCGATTTTTCTGCGCGGCGCTGGCGGCCGTCACCGTGGCGGTCGCCGGCGATGCC
CGCGCCTTGGACCTGCTGGG

Product: sensory box/response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MAESRPIRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGTSYDLILADYDMPVCGGIEVIATLAARGVDIP
VIMVTGNGSEKVAVEALKQGAADYVVKDLEMGYIELLPIVIEQVLTRQELLREKELMAEMIRDREERYRRLVELSPDGIA
IHVGDRIAFINAAGARLLGASDPTGVIGRRVADLVSPDYLCLVRDQLASESTGSDAVPWFEERLTLPGGRAVDVELAAVP
FSHEGEEALQVIIRDITEKKLAKRRLEFLAHHDPLTGLANRVLFFDRLDVSLRQAERDRQCAALLFIDLDHFKGVNDVFG
HDAGDVLLMEAARRIESCLRKADSVARMGGDEFTVILTRVSGEADAAMVAGKIIEALAVPVALAGGECTVGASIGISMYP
LDAADAESLLRKADAAMYRAKRLGKNRFAFAMHDPCAGAVDAAPQACAGSPC

Sequences:

>Translated_452_residues
MAESRPIRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGTSYDLILADYDMPVCGGIEVIATLAARGVDIP
VIMVTGNGSEKVAVEALKQGAADYVVKDLEMGYIELLPIVIEQVLTRQELLREKELMAEMIRDREERYRRLVELSPDGIA
IHVGDRIAFINAAGARLLGASDPTGVIGRRVADLVSPDYLCLVRDQLASESTGSDAVPWFEERLTLPGGRAVDVELAAVP
FSHEGEEALQVIIRDITEKKLAKRRLEFLAHHDPLTGLANRVLFFDRLDVSLRQAERDRQCAALLFIDLDHFKGVNDVFG
HDAGDVLLMEAARRIESCLRKADSVARMGGDEFTVILTRVSGEADAAMVAGKIIEALAVPVALAGGECTVGASIGISMYP
LDAADAESLLRKADAAMYRAKRLGKNRFAFAMHDPCAGAVDAAPQACAGSPC
>Mature_451_residues
AESRPIRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGTSYDLILADYDMPVCGGIEVIATLAARGVDIPV
IMVTGNGSEKVAVEALKQGAADYVVKDLEMGYIELLPIVIEQVLTRQELLREKELMAEMIRDREERYRRLVELSPDGIAI
HVGDRIAFINAAGARLLGASDPTGVIGRRVADLVSPDYLCLVRDQLASESTGSDAVPWFEERLTLPGGRAVDVELAAVPF
SHEGEEALQVIIRDITEKKLAKRRLEFLAHHDPLTGLANRVLFFDRLDVSLRQAERDRQCAALLFIDLDHFKGVNDVFGH
DAGDVLLMEAARRIESCLRKADSVARMGGDEFTVILTRVSGEADAAMVAGKIIEALAVPVALAGGECTVGASIGISMYPL
DAADAESLLRKADAAMYRAKRLGKNRFAFAMHDPCAGAVDAAPQACAGSPC

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=213, Percent_Identity=35.2112676056338, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1788381, Length=301, Percent_Identity=32.890365448505, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87081881, Length=229, Percent_Identity=35.8078602620087, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1786584, Length=254, Percent_Identity=31.1023622047244, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=37.5, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=36.6120218579235, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=34.6590909090909, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=35.4430379746835, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=32.5, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=30.5882352941176, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=27.5641025641026, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788550, Length=126, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787229, Length=130, Percent_Identity=32.3076923076923, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 48853; Mature: 48722

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESRPIRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGTSYDLILADYDM
CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCEEEEEEECCC
PVCGGIEVIATLAARGVDIPVIMVTGNGSEKVAVEALKQGAADYVVKDLEMGYIELLPIV
CCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
IEQVLTRQELLREKELMAEMIRDREERYRRLVELSPDGIAIHVGDRIAFINAAGARLLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCCCEEECC
SDPTGVIGRRVADLVSPDYLCLVRDQLASESTGSDAVPWFEERLTLPGGRAVDVELAAVP
CCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEECC
FSHEGEEALQVIIRDITEKKLAKRRLEFLAHHDPLTGLANRVLFFDRLDVSLRQAERDRQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHCC
CAALLFIDLDHFKGVNDVFGHDAGDVLLMEAARRIESCLRKADSVARMGGDEFTVILTRV
EEEEEEEEHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
SGEADAAMVAGKIIEALAVPVALAGGECTVGASIGISMYPLDAADAESLLRKADAAMYRA
CCCCHHHHHHHHHHHHHHHHHEEECCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHH
KRLGKNRFAFAMHDPCAGAVDAAPQACAGSPC
HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AESRPIRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGTSYDLILADYDM
CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCEEEEEEECCC
PVCGGIEVIATLAARGVDIPVIMVTGNGSEKVAVEALKQGAADYVVKDLEMGYIELLPIV
CCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHH
IEQVLTRQELLREKELMAEMIRDREERYRRLVELSPDGIAIHVGDRIAFINAAGARLLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEECCCCEEECC
SDPTGVIGRRVADLVSPDYLCLVRDQLASESTGSDAVPWFEERLTLPGGRAVDVELAAVP
CCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEECC
FSHEGEEALQVIIRDITEKKLAKRRLEFLAHHDPLTGLANRVLFFDRLDVSLRQAERDRQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHCC
CAALLFIDLDHFKGVNDVFGHDAGDVLLMEAARRIESCLRKADSVARMGGDEFTVILTRV
EEEEEEEEHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
SGEADAAMVAGKIIEALAVPVALAGGECTVGASIGISMYPLDAADAESLLRKADAAMYRA
CCCCHHHHHHHHHHHHHHHHHEEECCCEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHH
KRLGKNRFAFAMHDPCAGAVDAAPQACAGSPC
HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]